Contents of /data/embedded-code-copies

Embedded code copies
====================

This file collects source packages that embed code from other projects.
This is considered bad for fixing security flaws because the fix needs
to be applied in multiple source packages.

Format:
<srcpkg> (<optional comment about srcpkg>)
        - <embedding srcpkg> <status> (<sort>; bug #<number>)
        NOTE: optional comments about the linkage of the embedding srcpkg

status: version number fixing the embedded copy, <unfixed>, <removed>,
        <itp>, <not-affected>, <unknown> if the version number can not
        be determined, or <unfixable> for unavoidable cases (e.g., forks
        that add real value)
sort: static (linking statically against a lib)
      embed (embedding a copy of the library into another source package)
      fork (the package is not just embedding code but it is a fork and
            thus might share parts of the source code)
      old-version (the package is an older version of essentially
                   the same code)

The srcpkg might be some string to identify the code if there is no
specific source package.

Everything up to the next line is ignored.
---BEGIN
xpdf (some srcpkgs use xpdf2 code, some xpdf3 code)
        NOTE: Fixed packages link to poppler library unless otherwise noted
        - pdftohtml <unknown>
        [sarge] - pdftohtml <unfixed>
        [etch] - pdftohtml <unfixed>
        NOTE: has been replaced by poppler-utils
        - kdegraphics 4:4.2.2-1 (embed; bug #436164)
        - texlive-base 3.0-12 (embed)
        - texlive-bin 2007-1 (embed)
        NOTE: links to poppler
        - koffice <unfixed> (embed; bug #436163)
        - libextractor 0.5.12-1 (embed)
        NOTE: libextractor is using its own pdf decoder now
        - ipe <unfixed> (embed)
        NOTE: embeds small parts with renamed source files: ipestdfonts.cpp, ipefonts.cpp, ipedct.cpp
        - ruby-gnome2 <unknown> (embed)
        NOTE: copy only present in source but links to poppler
        - pdfedit <unfixed> (embed; bug #510794)
        - swftools <unfixed> (embed; bug #551293)
        - poppler <unfixable> (fork)

ppmd
        - libcomplearn-mod-ppmd <unfixed> (fork)
        NOTE: discussion in #458152

libevent
        - transmission 1.71-1 (embed; bug #529372)

lrmi
        - read-edid 2.0.0-1 (embed; bug #495131)

peercast
        - gnome-peercast <removed> (embed)
        [etch] - gnome-peercast <unfixed> (embed)

silc-toolkit
        - silc-client 1.1~beta6-1 (embed)

icclib
        - ghostscript <unfixed> (embed)
        - argyll <unfixed> (embed)

dietlibc
        - ccontrol 0.9.1+20071204-1 (static)

libmikmod
        - sdl-mixer1.2 <unfixed> (embed)
        TODO: report bug

libiax
        - iaxmodem <unfixable> (embed; bug #548885)

spandsp
        - iaxmodem <unfixable> (embed; bug #548885)

zlib (lots of apps embed a copy, but link dynamically, but there are a few exceptions)
        - dpkg <unfixed> (embed)
        NOTE: see 18196.48620.491996.624772@davenant.relativity.greenend.org.uk on debian-devel for discussion
        - rsync <unfixed> (embed)
        NOTE: somehow derived code base
        - mono <unfixed> (embed)
        TODO: check mozilla
        - Linux kernels <unfixed> (embed)
        - pvpgn 1.7.8-2 (embed)
        - mrtg 2.12.2-1 (embed)
        - rpm <unknown> (embed)
        NOTE: pinged anibal since when rpm was fixed
        - tuxcmd-modules <unfixed> (embed)
        - zsync <unfixed>
        - tra <unfixed>
        - sash <unfixed>
        - nsis <unfixed>
        - mseide-msegui <unfixed>
        NOTE: mseide
        - mirrordir <unfixed>
        - poco <unfixed>
        - klibc <unfixed>
        - ghostscript <unfixed>
        - freeimage <unfixed>
        - clamav <unfixed> (fork)
        NOTE: from the changelog: "libclamav6 does indeed duplicate parts of the zlib code, but there is not way around that"
        - tuxonice-userui <unfixed>
        - plt-scheme <unfixed>
        - perl <unfixed>
        - paraview <unfixed>
        - gcvs <unfixed>
        - dump <unfixed>
        - aide <unfixed> (static)
        - dar <unfixed> (static)
        - avfs <unfixed>
        - fpc <unfixed>
        - winff <unfixed>
        NOTE: inherited from fpc, see #472304
        - lazarus <unfixed>
        NOTE: inherited from fpc, see #472304
        - erlang <unfixed> (embed)
        - gamera 3.2.3-1 (embed)
        - python2.4 <unfixed> (embed; bug #553403)
        - python2.5 <unfixed> (embed; bug #553403)

dulwich
        - hg-git 0.1.0-1 (embed; bug #541996)

libvigraimpex
        - hugin <unfixed> (embed; bug #542259)
        - enblend-enfuse <unfixed> (embed; bug #542258)
        - gamera 3.2.3-1 (embed)

libbz2
        - dpkg <unfixed> (static)

libgadu
        - centericq <unfixed> (embed)
        - pidgin <unfixed> (embed)
        NOTE: pidgin links dynamically against libgadu; that should be fixed, then???
        - kdenetwork 4:3.3.2-5 (embed)
        NOTE: from kdenetwork: kopete
        - ekg 1:1.8~rc0-1 (embed)
        - kadu 0.6.0.2-3 (embed; bug #504430)
        - gadu <itp> (embed)

xmlrpc (which package is the "origin" of this code?)
        - drupal <unfixed> (embed)
        - phpgroupware <unfixed> (embed)
        - egroupware <unfixed> (embed)
        - phpwiki <unfixed> (embed)
        - php4 <unfixed> (embed)
        TODO: check, php-pear, IIRC this was reorganized some weeks ago?

shtool (affects build-time only)
        - mysql-ocaml <unfixed> (embed)
        - php4 <unfixed> (embed)

iceape
        - iceweasel <unfixed> (fork)
        - icedove <unfixed> (fork)
        - xulrunner <unfixed> (fork)
        - kompozer <unfixed> (embed; bug #532168)

xli
        - xloadimage <unfixed> (embed)

lesstif (beware: two different lesstif APIs supported in one package, MOTIF 1.2 discarded upstream)
        - openmotif <unfixed> (embed)
        - libxpm <unfixed> (embed)

kerberized apps with BSD origin
        - krb4 <removed> (embed)
        - krb5 <unfixed> (embed)
        - heimdal <unfixed> (embed)

grip (which pkg is the origin?)
        - libcdaudio <unfixed>
        - grip <unfixed>
        - gnome-vfs <unfixed>
        TODO: check vfs2 as well

fudforum
        [etch] - phpgroupware <unfixed> (embed)
        NOTE: phpgroupware-fudforum
        [sarge] - egroupware-fudforum <removed> (embed)

libbsd
        - rdate 1:1.2-3 (embed)
        - atheme-services <unfixed>
        - libbsd-arc4random-perl <unfixed>
        - isakmpd <unfixed>

cvs
        - gcvs <unfixed> (embed)
        NOTE: see cvsunix/src in tarball

pcre3
        - php4 <unknown> (embed)
        - analog 2:5.23-0woody1 (embed)
        - goffice <unfixed> (embed)
        NOTE: libgoffice-*
        - vfu 4.06-4.1 (embed; bug #450754)
        - tf5 5.0beta7-1 (embed)
        - monotone 0.43-1 (embed)
        NOTE: this only affects versions >= 0.37
        - glib2.0 2.15.2-1 (embed)
        - apache2 2.0.53-4 (embed)
        - exim4 4.10-0.srh20.12 (embed)
        - yacas <unfixed> (embed)
        NOTE: <= 1.0.x; is using pcre to scan text, can execute shell commands via the syntax anyway
        - gtamsanalyzer.app 0.42-5 (embed)
        - tin <unknown> (embed)
        - kazehakase 0.5.2-1
        - webkit 1.0.1-1 (embed)
        - qt4-x11 <unfixed> (embed)
        NOTE: embedded via webkit copy
        - erlang <unfixed> (embed)

tiff
        - wxwindows2.4 2.2.1 (embed)
        - gamera 3.2.3-1 (embed)

uudeview
        - libconvert-uulib-perl <unfixed> (embed)
        - pan <unfixed> (embed)

sqlite (not affected by security vulnerabilities so far)
        - amarok <unfixed> (embed)
        - monotone 0.43-1 (embed)
        - iceweasel <unfixed> (embed)

util-linux/mount
        - loop-aes-utils <unfixed> (embed)
        NOTE: contains code from util-linux' mount in the mount-aes-udeb

sylpheed
        - sylpheed-claws <unfixed> (fork)

phpsysinfo
        - egroupware <unfixed> (embed)
        - phpgroupware <unfixed> (embed)

phpldapadmin
        [sarge] - egroupware <unfixed> (embed)
        NOTE: removed from egroupware after sarge

chmlib
        - kchmviewer <unknown> (embed)

ffmpeg (libavcodec/libavformat)
        - mplayer 1.0~rc2-14 (embed; bug #395252)
        - kino 1.0.0-1
        - vlc <not-affected> (Links dynamically since initial release)
        - smilutils 0.3.0-10
        NOTE: smilutils likely fixed earlier, marking Etch's version as fixed
        - motion 3.1.19-1
        - gstreamer0.10-ffmpeg 0.10.3-2
        - xmovie <removed> (static)
        TODO: gimp-gap (potentially using ffmpeg code as well)
        - avifile 1:0.7.48~20090503.ds-1 (embed; bug #538750)

faad2
        - mplayer 1.0~rc2-20 (embed)
        - avifile <unfixed> (embed; bug #538750)

libmad (MPEG decoding lib)
        - xine-lib <unfixed> (embed)
        - avifile 1:0.7.48~20090503.ds-1 (embed) [./plugins/libmad/*]
        TODO: check ocaml-mad, madplay, pymad, xmms-mad, xmms2

libdts
        - xine-lib <unfixed> (embed)

flac
        - xine-lib <unfixed> (embed)

liba52
        - a52dec <unfixed> (embed)
        - xine-lib <unfixed> (embed)

libmpeg2
        - mpeg2dec <unfixed> (embed)
        - xine-lib <unfixed> (embed)

libntlm
        - wget <unfixed> (fork; bug #550436)
        - curl <unfixed> (fork; bug #550437)
        - cntlm <unfixed> (fork; bug #550438)

uw-imap
        - pine <unfixed> (embed)
        - alpine <unfixed> (embed)

imagemagick
        - graphicsmagick <unfixed> (fork)

python-urlgrabber
        - mercurial <unfixed> (embed; bug #531062)
        - w3af <unfixed> (embed)
        [experimental] - harvestman <unfixed> (embed)

beautifulsoup
        - python-mechanize <unfixed> (embed)
        - zope2.11 <unfixed> (embed)
        - twill <unknown> (embed)

halibut
        - nsis <unfixed> (fork)

libghttp
        - hotway <unfixed> (embed)

libsndfile
        - ardour 1:2.7.1-1 (embed)

glibmm2.4
        - ardour 1:2.7.1-1 (embed)

libgnomecanvasmm2.6
        - ardour 1:2.7.1-1 (embed)

libsigc++-2.0
        - ardour 1:2.7.1-1 (embed)

soundtouch
        - ardour 1:2.7.1-1 (embed)

libmms
        - xine-lib <unfixed> (embed)
        - mimms <unfixed> (embed)

fckeditor
        - knowledgeroot 0.9.8.5-3 (embed; bug #461555)
        - moin 1.8.2-2 (embed; bug #452599)
        - karrigell <removed> (embed; bug #452598)
        - gforge 4.6.99+svn6225-1 (embed)
        - request-tracker3.8 <unfixed> (embed)

ipatlas (not packaged in Debian)
        - moodle <unfixed> (embed; bug #507185)

libphp-phpmailer
        - moodle <unfixed> (embed; bug #507185)
        - mahara <unfixed> (embed)
        - symfony <unfixed> (embed)
        [etch] - phpgroupware <unfixed> (embed)
        NOTE: phpgroupware-felamimail is only in etch
        - egroupware <unfixed> (embed; bug #504283)
        - glpi <unfixed>

htmlArea (not packaged in Debian)
        - moodle <unfixed> (embed)

giflib
        - wine <unfixed> (embed; bug #466181)

bennu (not packaged in Debian, http://bennu.sourceforge.net)
        - moodle <unfixed> (embed)

smarty
        - moodle 1.8.2-2 (embed; bug #471158)
        - gallery2 2.2.5-2 (embed; bug #471160)
        - mahara 0.9.2-2 (embed; bug #471201)
        - gosa 2.4beta1-1 (embed; bug #471200)

TinyMCE
        - wordpress 2.5.1-3 (embed; bug #478257)
        - moodle <unfixed> (embed; bug #507185)
        - knowledgeroot <unfixed> (embed)
        - joomla <itp> (bug #326398)

scintilla (upstream provides static lib, rejected shared lib http://sf.net/support/tracker.php?aid=2488121)
        - scite <unfixed> (embed)
        - qscintilla <unfixed> (embed)
        - qscintilla2 <unfixed> (embed)
        - geany <unfixed> (fork)
        - anjuta <unfixed> (embed)

libphp-adodb
        - moodle <unfixed> (embed; bug #507185)
        NOTE: also AdoDB-XML Schema
        - gallery2 <unfixed> (embed)
        - phppgadmin <unfixed> (embed)
        - egroupware <unfixed> (embed)
        - phpwiki <unfixed> (embed)
        - torrentflux 2.0beta1-2 (embed)
        - ipplan <unfixed> (embed)
        - typo3-src <unfixed> (embed)
        - cacti <unknown> (embed)
        [sarge] - cacti <unfixed> (embed)
        NOTE: dependency exists, but internal version is used
        - gforge 4.7~rc2-6 (embed)
        - mahara <unfixed> (embed)

gzip
        - linux-kernel <unfixed> (embed)
        NOTE: lib/inflate.c
        - klibc <unfixed> (embed)
        NOTE: based on linux-kernel gzip code
        - busybox <unfixed> (embed)

neon
        - cadaver 0.22.3+debian-1 (embed; bug #188381)
        - gnome-vfs2 <unfixed> (embed; bug #395874)
        [etch] - litmus <unfixed> (embed; #395875)
        - litmus <removed> (embed; #395875)
        [sarge] - screem <unfixed> (embed)
        - sitecopy 1:0.16.3-5 (embed; bug #395876)
        [etch] - tla <unfixed> (embed; bug #395877)
        [sarge] - tla <unfixed> (embed; bug #395877)

libmodplug
        - gst-plugins-bad0.10 <unfixed> (embed)

libvncserver
        - vino <unfixed> (embed)

putty
        - filezilla <unfixed> (embed)

tinyxml (not packaged in Debian)
        - filezilla <unfixed>

gv
        - evince <unfixed> (embed)
        NOTE: ps/ tree from gv 3.5.8
        NOTE: evince-gtk is affected (a component of evince source package)

libXbae
        - paw <removed> (embed)
        [etch] - paw <unfixed> (embed)

libgtkhtml
        - claws-mail-extra-plugins <unfixed> (fork)

libXaw
        - paw <removed> (embed)
        [etch] - paw <unfixed> (embed)
        NOTE: I plan to deal with the above two cases after Etch release. -- KevinMcCarty

libgd2
        - graphviz <unfixed> (embed)
        NOTE: lib/gd seems to be 2.0.33
        - wml <unfixed> (embed)
        - libwmf <unfixed> (embed)
        NOTE: derived from gd 1.6.3

rar
        - unrar-nonfree <unfixed> (embed)

unrar-free (maybe this code is derived from the original rar, too?)
        - clamav <unfixed> (embed)
        NOTE: seems to be disabled in default config

mplayer (DirectMedia Object loader)
        - xine-lib <unfixed> (embed)
        NOTE: src/libw32dll/
        - vlc <unfixed> (embed)
        NOTE: modules/codec/dmo/
        - mplayer 1.0~rc2-20 (embed)

libwpd (WordPerfect converter)
        - openoffice.org <unfixed> (embed)

fsplib (http://sourceforge.net/projects/fsp/)
        - gftp <unfixed> (embed)
        NOTE: lib/fsplib version 0.3

sprng
        - tree-puzzle <unfixed> (embed)

librpcsecgss
        - krb5 <unfixed> (embed)

jasper
        - ghostscript <unfixed> (embed)
        - gs-gpl <unfixed> (embed)

libiris
        - psi <unfixed> (embed)
        - kdenetwork <unfixed> (embed)
        NOTE: kopete embeds libiris but links dynamically to libidn
        - kdegames <unfixed> (embed)
        NOTE: ksirk/kde4
        
libidn
        - monotone 0.43-1 (embed)
        - psi <unfixed> (embed)
        NOTE: psi embeds libiris which embeds libidn
        - kdegames <unfixed> (embed)
        NOTE: kdegames/kde4 embeds libiris which embeds libidn

liblua
        - monotone 0.43-1 (embed)
        - nmap 5.00-1 (embed; bug #527997)
        [lenny] - nmap <unfixed> (embed; bug #527997)

libbotan
        - monotone 0.43-1 (embed)

NetXX
        - monotone 0.43-1 (embed)

libgc
        - mono <unfixed> (embed)

lzma
        - p7zip <unfixed> (embed)
        - xz-utils <unfixed> (fork)

lzo
        - grub2 <unfixed> (embed)

yassl
        - mysql-dfsg-5.0 <unfixed> (embed)

pax code
        - tar <unfixed> (embed)
        - cpio <unfixed> (embed)

t1lib
        - tetex-bin 2.0.2-1 (embed)
        - texlive-bin <unknown> (embed)

guichan
        - boswars <unfixed> (embed)
        NOTE: maintainer notified us, working on it

tolua
        - boswars <unfixed> (embed)
        NOTE: maintainer notified us, working on it

asio-dev
        - luxrender <removed> (embed)

xine-lib
        - vlc <unfixed> (embed)
        NOTE: only parts included in modules/access/rtsp

netpbm
        - tcl8.3 <unfixed> (embed)
        - tcl8.4 <unfixed> (embed)
        - tcl8.5 <unfixed> (embed)
        NOTE: generic/tkImgGIF.c

tk8.5
        - tk8.0 <removed> (old-version)
        - tk8.3 <unfixed> (old-version)
        - tk8.4 <unfixed> (old-version)
        - perl-tk <unfixable> (fork)

samba
        - mc 2:4.6.2~git20080311-1 (embed)
        NOTE: maintainer is aware of this, currently searching a solution

plib1.8.4c2
        - boson <unfixed> (fork)
        NOTE: embedding the font pieces of plib, based on the header file it is forked, contains "Added by AB for boson." and similar

fribidi
        - quesoglc <unfixed> (embed)
        NOTE: compiled against system fribidi in Debian - embed only used when fribidi is not available on the system

glew
        - quesoglc <unfixed> (embed; bug #489341)
        NOTE: waiting on GLEW_MX version of glew (see bug #474488)

minorGems (pabs contacted upstream about shared lib, he considers minorGems an 'ever-evolving collection of reusable code fragments' for his own use)
        - transcend <unfixed> (embed)
        - cultivation <unfixed> (embed)
        - passage <unfixed> (embed)
        - gravitation <unfixed> (embed)

tar
        - libarchive <unfixed> (embed)
        NOTE: FreeBSD tar (tar/bsdtar.c) in libarchive 1.2 and higher. libarchive ends up statically linked into bsdtar executable

cpio
        - libarchive <unfixed> (embed)
        NOTE: cpio included in libarchive 2.2 and higher, but not compiled until libarchive 2.4.11-1 (as bsdcpio package)

webkit
        - qt4-x11 <unfixed> (embed)

ftgl
        - blender 2.46+dfsg-1 (embed)

wv
        - abiword <unfixed>

qemu
        - kvm <unfixed> (embed; bug #543159)
        - xen-3 <unfixed> (embed)
        - xen-unstable <unfixed> (embed)

vgabios
        - kvm <unfixed> (embed; bug #489442)

bochs
        - kvm <unfixed> (embed; bug #489442)

speex
        - vorbis-tools <unfixed> (embed)
        NOTE: while comiled against libspeex-dev, ogg123/speex_format.c is compiled with embedded code copied from speexdec.c
        - gst-plugins-good0.10 <unfixed> (embed)
        - xine-lib <unfixed> (embed)
        - libfishsound <unfixed> (embed)
        - libannodex <unfixed> (embed)
        - vlc <unfixed> (embed)
        - xmms-speex <unfixed> (embed)
        - libsdl-sound1.2 <unfixed> (embed)
        - sweep <unfixed> (embed)

libreadline
        - magic <itp> (old-version)

opcode
        - ode <unfixed> (embed)
        NOTE: opcode is not a package in debian, it is just embedded
        NOTE: http://www.codercorner.com/Opcode.htm

gimpact 
        - ode <unfixed> (embed)
        NOTE: gimpact is not a package in debian, it is just embedded
        NOTE: http://gimpact.sf.net

mochikit
        - mahara <unfixed> (embed)
        NOTE: they require extra patches, still unmerged upstream
        - ntop <unfixed> (embed)
        - coherence 0.6.2-1 (embed)
        NOTE: python-coherence
        - paste <unfixed> (embed)
        NOTE: python-paste
        - turbogears <unfixed> (embed)
        NOTE: python-turbogears
        - plone3 <unfixed> (embed)
        NOTE: zope-plone3

prototypejs
        - netbeans-ide 6.0.1+dfsg-2 (embed)
        - auth2db <unfixed> (embed)
        - webcit <unfixed> (embed)
        NOTE: citadel-webcit
        - asterisk <unfixed> (embed)
        - doc-iana <unfixed> (embed)
        - libaws <unfixed> (embed)
        NOTE: libaws-doc
        - libgettext-ruby <unfixed> (embed)
        NOTE: libgettext-ruby-data
        - libjson-ruby <unfixed> (embed)
        NOTE: libjson-ruby-doc
        - lucene2 <unfixed> (embed)
        NOTE: liblucene2-java-doc
        - libopenid-ruby <unfixed> (embed)
        - solr <unfixed> (embed)
        NOTE: solr-common
        - glpi <unfixed> (embed)
        - mnemo2 <unfixed> (embed)
        - nag2 <unfixed> (embed)
        - knowledgeroot <unfixed> (embed)
        - mediatomb <unfixed> (embed)
        NOTE: mediatomb-common
        - mt-daapd <unfixed> (embed)
        - op-panel <unfixed> (embed)
        - ebug-http <unfixed> (embed)
        - phpgedview <removed> (embed)
        - poker-network <unfixed> (embed)
        NOTE: poker-web
        - webhelpers <unfixed> (embed)
        NOTE: python-webhelpers
        - qwik <unfixed> (embed)
        - rails <unfixed> (embed)
        - typo3-src <unfixed> (embed)
        - wordpress 2.5.0-2 (embed)
        - zope <unfixed> (embed)
        NOTE: zope-plone3
        - smokeping <unfixed> (embed)
        - ampache 3.4.1-2 (embed)
        - exaile <unfixed> (embed)
        - hobix <unfixed> (embed)
        - pixelpost <unfixed> (embed)
        - symfony <unfixed> (embed)
        NOTE: it's been said that there are custom changes
        - zabbix <unfixed> (embed)
        NOTE: zabbix-frontend-php
        - turba2 <unfixed> (embed)

gdb
        - insight <unfixed> (embed)

e2fsprogs
        - ldiskfsprogs <unfixable> (fork)

quazip (not packaged in Debian)
        - qcake <unfixed> (embed)
        NOTE: starting with upstream version 0.6.4

exo
        - pcmanfm <unfixed> (embed; bug #499677)
        NOTE: slightly modified source code

java
        - openjdk-6 <unfixed>
        - sun-java5 <unfixed>
        - sun-java6 <unfixed>

libphp-snoopy
        - ampache 3.4.1-2 (embed; bug #504169)
        - mahara 1.0.5-2 (embed; bug #504170)
        - pixelpost 1.7.1-5 (embed; bug #504171)
        - mediamate 0.9.3.6-5 (embed; bug #504172)
        - opendb <removed> (embed; bug #504173)
        [etch] - opendb <unfixed> (embed; bug #504173)
        - wordpress 2.5.1-9 (embed; bug #443948)
        - moodle <unfixed> (embed; bug #507185)
        [etch] - phpgroupware <unfixed> (embed)
        NOTE: phpgroupware-felamimail
        - magpierss 0.72-3 (embed; bug #431089)

jquery
        - zekr <unfixed> (embed)
        - wordpress <unknown> (embed)
        - yocto-reader <unfixed> (embed)
        - textpattern <unfixed> (embed)
        - genshi 0.5.1-1 (embed)
        NOTE: compressed file under examples/ dir
        - prewikka <unfixed> (embed)
        - libramaze-ruby <unfixed> (embed)
        - drupal5 <unfixed> (embed)
        - b2evolution <unfixed> (embed)
        - wesnoth <unfixed> (embed)

tablesorter (jquery plugin, not packaged yet)
        - wesnoth <unfixed> (embed)

kses
        - wordpress <unfixed> (embed; bug #504242)
        NOTE: their copy has all methods renamed to wp_<foo>
        NOTE: kses isn't in Debian, RFP: #504240
        - moodle <unfixed> (embed; bug #507185)
        - egroupware <unfixed> (embed)

magpierss
        - wordpress <unfixed> (embed; bug #504242)
        - moodle <unfixed>

php-gettext
        - wordpress 2.8.4-1 (embed; bug #504242)

libphp-ixr (name may change, it is the Incutio XML-RPC)
        - wordpress <unfixed> (embed; bug #504242)
        NOTE: libphp-ixr isn't in Debian, RFP: #504236
        - dokuwiki <unfixed> (embed)
        - textpattern <unfixed> (embed)

libphp-cas
        - glpi <unfixed> (embed)
        - moodle <unfixed> (embed; bug #505984)

scriptaculous
        - glpi <unfixed> (embed)
        - libaws <unfixed> (embed)
        NOTE: libaws-doc
        - op-panel <unfixed> (embed)
        - symfony <unfixed> (embed)
        NOTE: maintainer says there are extra incompatible changes required
        - pixelpost <unfixed> (embed)
        - webhelpers <unfixed> (embed)
        NOTE: python-webhelpers
        - qwik <unfixed> (embed)
        - smokeping <unfixed> (embed)
        - turba2 <unfixed> (embed)
        - typo3-src 4.2.3-1 (embed)

libmarkdown-php
        - moodle <unfixed> (embed; bug #507185)
        - pixelpost <unfixed> (embed)

php-openid
        - wordpress-openid <itp> (embed)

geshi
        - dokuwiki 0.0.20080505-3.1 (embed)
        - pgfouine 1.0-1.1 (embed)
        - websvn 2.1.0-1 (embed)

webcalendar
        - gforge 4.7~rc2-6 (embed; bug #504758)

libical
        - kdepim <unfixed> (fork)
        - kdepimlibs <unfixed> (fork)
        NOTE: fixed in KDE4 post 4.1.x series
        - claws-mail-extra-plugins <unfixed> (fork)

libltdl3
        - kdelibs <unfixed> (embed)
        NOTE: it's been said it sets RT_GLOBAL (or something like that) at runtime and version in experimental of libltdl can optionally set it
        - synfig <unfixed> (embed)

harfbuzz
        - qt4-x11 <unfixed> (embed)

libzip
        - php5 <unfixed> (fork)
        - odt2txt <unfixed> (embed; bug #523808)

json.php (not packaged; should be replaced with php's built-in functions)
        - moodle <unfixed>
        - yui <unfixed>
        - gallery2 <unfixed>
        - dokuwiki <unfixed>
        - typo3-src <unfixed>

php-fpdf
        - tcpdf <itp> (fork)
        - moodle <unfixed>
        - phpwiki <unfixed>
        - egroupware <unfixed>
        - ldap-account-manager <unfixed> (fork)

tcpdf (itp: #495985)
        - moodle <unfixed>
        - phpmyadmin <unfixed>

typo3
        - moodle <unfixed>

spreadsheet_writeexcel (PHP port of libspreadsheet-writeexcel-perl; itp: #487557)
        - moodle <unfixed>
        - gosa <unfixed>

php-ole (itp: #487558)
        - moodle <unfixed>

pieforms (http://www.catalyst.net.nz)
        - mahara <unfixed>

savant2 (http://phpsavant.com)
        - egroupware <unfixed>

rssparser (http://nwow.org)
        - egroupware <unfixed>
        - phpgroupware <unfixed>

lcms
        - openjdk-6 <unfixed> (fork)

libphp-phplayersmenu
        - diogenes <unfixed>
        - phpldapadmin <unfixed>

libphp-pclzip
        - docvert <unfixed>
        - moodle <unfixed>
        - egroupware <unfixed>

libphp-simplepie
        - dokuwiki <unfixed>

libphp-jpgraph
        - egroupware <unfixed>

php-simpletest
        - moodle <unfixed>

libpng
        - iceweasel <not-affected> (uses xulrunner)
        - icedove 1.5.0.13+1.5.0.15b.dfsg1+prepatch080614i-0etch1, 2.0.0.19-1 (embed)
        - iceape 1.0.13~pre080614i-0etch1 (embed)
        - xulrunner 1.9.0.13-1 (embed)
        [lenny] - xulrunner 1.9.0.11-0lenny1
        [etch] - xulrunner 1.8.0.15~pre080614i-0etch1 (embed)
        - gamera 3.2.3-1 (embed)

irssi
        - silc-client <unfixed> (embed)
        NOTE: Seems to be a pre-0.8.12 version that is used in irssi-plugin-silc

extc
        - mtasc <unfixed> (embed)
        - haxe <unfixed> (embed)

swflib
        - mtasc <unfixed> (embed)
        - haxe <unfixed> (embed)

libitext-java
        - bouncycastle 2.1.4-1 (embed)

python-ply
        - pyke <unfixed> (embed)

libdumbnet (libdnet upstream)
        - nmap <unfixed> (fork)

gcc-4.4
        - gcc-mingw32 <unfixed> (embed)

camlimages
        - advi <unfixed> (static; bug #550441)

memcached
        - memcachedb <unfixed> (embed)

yajl
        - argyll <unfixed> (embed; bug #544223)
        NOTE: reference, confirmed by build logs: http://lists.debian.org/debian-mentors/2009/08/msg00062.html

libept
        - adept <unfixed> (embed; bug #540649)

libvorbis
        - iceweasel <not-affected> (uses xulrunner)
        - xulrunner <not-affected> (introduced in 1.9.1)
        TODO: recheck when xulrunner 1.9.1 enters unstable [- xulrunner <unfixed> (embed; bug #540959)]

cairo
        - iceweasel <not-affected> (uses xulrunner)
        - xulrunner 1.8.0.15~pre080614i-0etch1 (embed)

php-net-dnsbl
        - serendipity <unfixed> (embed)

php-onyx-rss
        - serendipity <unfixed> (embed)

php-text-wiki
        - serendipity <unfixed> (embed)

php-xml-rpc
        - serendipity <unfixed> (embed)

polarssl (does not have a shared library)
        - pdkim <itp> (embed; bug #543150)
        - xyssl <unfixed> (old-version)

pidgin
        - gaim <removed> (old-version)

icu
        - webkit 1.0.1-1 (embed; bug #547214)
        - texlive-bin <unfixed> (fork)
        NOTE: texlive upstream working with icu upstream to merge their changes

cyrus-imapd-2.2
        - kolab-cyrus-imapd <unfixed> (fork)
        - dovecot 1:1.2.1-1 (embed) [/dovecot-sieve/src/libsieve/*]

python-cxx-dev
        - freecad <unfixed> (embed; bug #547936)

libzipios++-dev
        - freecad <unfixed> (embed; bug #547941)

linux-2.6
        - kvm <unfixed> (embed; bug #549973) [./kernel/*]
        - linux-kbuild-2.6 <unfixed> (embed; bug #550379) [./kbuild/*]
        - kernel-source-2.6.8 <removed> (old-version)
        - kernel-source-2.4.27 <removed> (old-version)
        - kernel-source-2.4.24 <removed> (old-version)
        - kernel-source-2.2.25 <removed> (old-version)
        - kernel-source-2.2.20 <removed> (old-version)

libfdt (not yet packaged separately for debian; http://www.jdl.com/software/)
        - kvm <unfixed> (embed) [./libfdt/*]

qweb (not packaged)
        - ajaxterm <unfixed>

opensaml2
        - opensaml <removed> (old-version)

shibboleth-sp2
        - shibboleth-sp <removed> (old-version)

tuxonice-userui
        - suspend2-userui <removed> (old-version)

expat
        - w3c-libwww <removed> (embed; bug #551941)
        [etch] - w3c-libwww <unfixed> (embed; bug #551941) [./modules/expat/*]
        - python-xml <unfixed> (embed; bug #551940) [./extensions/expat/*]
        - python2.5 <unfixed> (embed; bug #553403) [./Modules/expat/*]
        - python2.4 <unfixed> (embed; bug #553403)
        - wxwindows2.4 <removed> (embed)
        - wxwidgets2.6 <unfixed> (embed)
        - wxwidgets2.8 <unfixed> (embed)
        - celementtree <unfixed> (embed)
        - audacity <unfixed> (embed)
        - matanza <unfixed> (embed)
        - tdom <unfixed> (embed)
        - udunits <unfixed> (embed)
        - apr-util 1.2 (embed)
        - ayttm <unfixed> (embed)
        - cableswig <unfixed> (embed)
        - cadaver <unfixed> (embed)
        - cmake <unfixed> (embed)
        - coin3 <unfixed> (embed)
        - gdcm <unfixed> (embed)
        - ghostscript <unfixed> (embed)
        - grmonitor <unfixed> (embed)
        - iceape <unfixed> (embed)
        - insighttoolkit <unfixed> (embed)
        - libparagui1.1 <unfixed> (embed)
        - paraview <unfixed> (embed)
        - poco <unfixed> (embed)
        - simgear <unfixed> (embed)
        - sitecopy <unfixed> (embed)
        - smart 1.0-1 (embed)
        [etch] - smart <unfixed> (embed)
        - swish-e <unfixed> (embed)
        - tla <unfixed> (embed)
        - vtk <unfixed> (embed)
        - wbxml2 <unfixed> (embed)
        - xmlrpc-c <unfixed> (embed)
        - iceweasel <unfixed> (embed)
        - kompozer <unfixed> (embed)
        - vxl <unfixed> (embed)
        - xulrunner <unfixed> (embed)
        - apache2 2.2 (embed)
        - texlive-bin <unfixed> (embed) [included twice]
        - vnc4 <unfixed> (embed)
        - xotcl <unfixed> (embed)

xerces-c
        - xerces-c2 <unfixed> (old-version)
        - xerces27 <removed> (old-version)

md5 (RSA's version; not the gnu version provided by coreutils)
        - w3c-libwww <removed> (embed; bug #551942)
        [etch] - w3c-libwww <unfixed> (embed; bug #551942) [./modules/md5/*]

enet
        - sauerbraten <unfixed> (embed; #497194)

eglibc
        - glibc <removed> (old-version)

galib
        - gamera 3.2.3-1 (embed)

configobj
        - bzr <unfixed> (embed)
        - elisa <unfixed> (embed)
        - gaupol <unfixed> (embed)
        - ipython <unfixed> (embed)
        - pida <unfixed> (embed)
        - psychopy <unfixed> (embed)
        - rest2web <unfixed> (embed)
        - auth2db <unknown> (embed)
        - dynagen <unknown> (embed)
        - iceweasel <unknown> (embed)
        - sabnzbdplus <unknown> (embed)
        - xulrunner <unknown> (embed)
        - nipy <not-affected> (embed) [./examples/neurospin/neurospy/configobj.py]

python-clientform
        - bibus <unfixed> (embed)
        - zope2.10 <unfixed> (embed)
        - zope2.11 <unfixed> (embed)
        - python-mechanize <unknown> (embed)
        - twill <unknown> (embed)

python-mechanize
        - zope2.10 <unfixed> (embed)
        - zope2.11 <unfixed> (embed)
        - twill <unknown> (embed)

pexpect
        - duplicity <unfixed> (embed)
        - hplip <unfixed> (embed)
        - smart <unfixed> (embed)

pyparsing
        - bauble <unfixed> (embed)
        - boa-constructor <unfixed> (embed)
        - calibre <unfixed> (embed)
        - matplotlib <unfixed> (embed)
        - zhpy <unfixed> (embed)
        - polybori <unknown> (embed)
        - python-whoosh <unknown> (embed)
        - twill <unknown> (embed)
        - zope-textindexng3 <unknown> (embed)

python-pysqlite2
        - python2.4 <unfixed> (embed; bug #553403)
        - python2.5 <unfixed> (embed; bug #553403)

celementtree
        - python2.5 <unfixed> (embed)
        - smart 1.0-1 (embed)
        [etch] - smart <unfixed> (embed)

elementtree
        - python2.5 <unfixed> (embed)
        - bzr <unfixed> (embed)
        - gedit <unfixed> (embed)
        - smart 1.0-1 (embed)
        [etch] - smart <unfixed> (embed)
        - solfege <unfixed> (embed)
        - w3af <unfixed> (embed)
        - python-qt4 <unknown> (embed)
        - sphinx <unknown> (embed)
        - python-nltk <itp> (embed)

python2.5
        - python2.4 <unfixed> (old-version)
        - jython <unfixed> (embed)
        NOTE: embeds many stdlib modules
        - python-django <unfixed> (embed)
        NOTE: emebeds stdlib modules: doctest, decimal
        - gamera 3.2.3-1 (embed)
        NOTE: embeds stdlib modules: ConfigParser, optparse, sets, textwrap 
        - boa-constructor <unfixed> (embed)
        NOTE: embeds stdlib modules: ConfigParser
        - nicotine <unfixed> (embed)
        NOTE: embeds stdlib modules: ConfigParser
        - museek+ <unfixed> (embed)
        NOTE: embeds stdlib modules: ConfigParser
        - vegastrike-data <unfixed> (embed)
        NOTE: embeds many stdlib modules
        - codespeak-lib <unfixed> (embed)
        NOTE: embeds stdlib modules: doctest, optparse, subprocess, textwrap    
        - config-manager <unfixed> (embed)
        NOTE: embeds stdlib modules: optparse
        - jhbuild <unfixed> (embed)
        NOTE: embeds stdlib modules: optparse, subprocess
        - smart <unfixed> (embed)
        NOTE: embeds stdlib modules: optparse
        - pyprotocols <unfixed> (embed)
        NOTE: embeds stdlib modules: doctest
        - ruledispatch <unfixed> (embed)
        NOTE: embeds stdlib modules: doctest
        - distribute <unfixed> (embed)
        NOTE: embeds stdlib modules: doctest
        - python-setuptools <unfixed> (embed)
        NOTE: embeds stdlib modules: doctest
        - zope.testing <unfixed> (embed)
        NOTE: embeds stdlib modules: doctest
        - translate-toolkit <unfixed> (embed)
        NOTE: embeds stdlib modules: textwrap, contextlib
        - libtpclient-py <unfixed> (embed)
        NOTE: embeds stdlib modules: subprocess
        - grass <unfixed> (embed)
        NOTE: embeds stdlib modules: subprocess
        - coherence <unfixed> (embed)
        NOTE: embeds stdlib modules: uuid
        - python-django-extensions <unfixed> (embed)
        NOTE: embeds stdlib modules: uuid
        - setroubleshoot <unfixed> (embed)
        NOTE: embeds stdlib modules: uuid
        - linkchecker <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - imdbpy <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - kiwi <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - moin <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - plone3 <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - roundup <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - rednotebook <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - turbogears <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - elisa <unfixed> (embed)
        NOTE: embeds msgfmt.py script, stdlib modules: uuid
        - calibre <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - mailman <unfixed> (embed)
        NOTE: embeds msgfmt.py script
        - python-docutils <unknown> (embed)
        NOTE: embeds stdlib modules: optparse, textwrap
        - python-imaging <unknown> (embed)
        NOTE: embeds stdlib modules: doctest
        - python-mechanize <unknown> (embed)
        NOTE: embeds stdlib modules: doctest
        - twill <unknown> (embed)
        NOTE: embeds stdlib modules: subprocess
        - zeroc-ice <unknown> (embed)
        NOTE: embeds stdlib modules: subprocess
        - wxwidgets2.8 <unknown> (embed)
        NOTE: embeds stdlib modules: subprocess
        - cycle <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - deluge <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - opendict <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - openerp-client <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - rapidsvn <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - wammu <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - gaphor <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - pida <unknown> (embed)
        NOTE: embeds msgfmt.py script
        - python-formencode <unknown> (embed)
        NOTE: embeds msgfmt.py script

argparse
        - twill <unfixed> (embed)
        - ipython <unfixed> (embed)

coherence
        - elisa <unfixed> (embed)

simpletal
        - plastex <unfixed> (embed)

flickrpc (not packaged in Debian, http://burtonini.com/bzr/flickrpc/)
        - postr <unfixed> (embed)
        - elisa <unfixed> (embed)

simplegeneric (not packaged in Debian, http://pypi.python.org/pypi/simplegeneric)
        - apertium-tolk <unfixed> (embed)
        - ipython <unfixed> (embed)
        - virtaal <unfixed> (embed)

distribute
        - setuptools <removed> (old-version)