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Revision 2047 - Directory Listing
Modified Tue Aug 25 19:34:30 2009 UTC (3 years, 9 months ago) by nbreen-guest
Copied from: unstable/gromacs revision 2046 
Tag for 4.0.5-4
Revision 2046 - Directory Listing
Modified Tue Aug 25 19:34:06 2009 UTC (3 years, 9 months ago) by nbreen-guest
Original Path: unstable/gromacs 
* 21_makefile_dups.dpatch: Actually "svn add" it this time.
* rules: Remove obsolete --disable-nice option from *_CONFIG_PARAMS.
* man/gromacs.7: Update macros for lintian cleanliness.
* changelog: Update date stamp for release.
Revision 2045 - Directory Listing
Modified Mon Aug 24 22:12:40 2009 UTC (3 years, 9 months ago) by nbreen-guest
Original Path: unstable/gromacs 
* patches/21_makefile_dups.dpatch: Eliminate duplicated files in the
  installation list of include/Makefile.am.  Autoconf 1.11 now passes
  multiple files to `install' at once, causing failures when one name
  is given twice.
* Update Standards-Version.
Revision 1935 - Directory Listing
Modified Thu Jun 25 00:23:30 2009 UTC (3 years, 11 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/control: Increment Standards-Version to 3.8.2; no changes required
Revision 1902 - Directory Listing
Modified Tue May 26 05:09:07 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
20_altivec_kernel.dpatch: Extend to cover src/gmxlib/nonbonded/nb_kernel_ppc_altivec/ppc_altivec_util.[ch], the one pair that _doesn't_ include the previously-patched header
Revision 1900 - Directory Listing
Modified Sun May 17 22:54:01 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
changelog: update for release
Revision 1899 - Directory Listing
Modified Sun May 17 22:52:54 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/20_altivec_kernel.dpatch and others: Shift PPC FTBFS fix to separate patch instead.  Give URL of bug reported upstream.
Revision 1898 - Directory Listing
Modified Thu May 14 19:55:12 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
(possibly) better way of implementing __restrict extension
Revision 1890 - Directory Listing
Modified Wed May 13 21:54:11 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
Enable -D__restrict__ on powerpc for use in Altivec-optimized kernels (FTBFS otherwise).
Revision 1888 - Directory Listing
Modified Tue May 12 01:19:45 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
Set distribution to unreleased.
Revision 1886 - Directory Listing
Modified Tue May 12 01:15:38 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/rules: force LDFLAGS on -lam/-openmpi builds to avoid accidental cross-linking (closes #526266, rooted in #452047)
Revision 1885 - Directory Listing
Modified Mon May 11 23:41:51 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
* debian/control: Convert svn+ssh:// URI to svn:// in Vcs-Svn field.
* debian/copyright: Replace "(C)" with "Copyright" per info-level lintian
  warning and extend dates.
Revision 1882 - Directory Listing
Modified Sun May 10 19:53:19 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
Remove 40_mpi_walls.dpatch, incorporated into new upstream release
Revision 1881 - Directory Listing
Modified Sun May 10 19:52:11 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
changelog: new upstream release
Revision 1842 - Directory Listing
Modified Tue Apr 28 19:21:48 2009 UTC (4 years ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/40_walls_mpi.dpatch: Correct another logging-based crash, when running systems with walls in parallel
Revision 1722 - Directory Listing
Modified Sun Mar 1 00:46:02 2009 UTC (4 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
New upstream release, 4.0.4
Revision 1721 - Directory Listing
Modified Sun Mar 1 00:44:56 2009 UTC (4 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
05_lt_init.dpatch: Add LT_INIT to configure.ac so that the libtool script can find its version; patch from/for Ubuntu
Revision 1603 - Directory Listing
Modified Mon Jan 19 21:38:55 2009 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
changelog: add 4.0.3-2 UNRELEASED stub
Revision 1601 - Directory Listing
Modified Mon Jan 19 21:37:04 2009 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
New upstream release, 4.0.3; remove patches 40-52 incorporated within
Revision 1600 - Directory Listing
Modified Mon Jan 19 20:24:07 2009 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
changelog: add 4.0.2-3 UNRELEASED stub
Revision 1598 - Directory Listing
Modified Mon Jan 19 18:43:25 2009 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/52_ia64_single_pointer: Test for non-zero pointer in IA64 single-precision kernel when writing to log file.
Revision 1590 - Directory Listing
Modified Fri Jan 2 02:17:11 2009 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/00list: new patches work somewhat better when they're also listed here
Revision 1588 - Directory Listing
Modified Wed Dec 31 19:13:51 2008 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/41_sprintf.dpatch: Replace sprintf calls relying on undefined string-appending behavior with proper, standards-compliant code, as noted on -devel.
Revision 1587 - Directory Listing
Modified Fri Dec 26 20:25:38 2008 UTC (4 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/51_mshift.dpatch: Patch a bug in src/gmxlib/mshift.c that would cause a crash when certain errors were printed while running on multiple CPUs due to incorrect log file handling, and a second bug that repeatedly generated such errors incorrectly: http://bugzilla.gromacs.org/show_bug.cgi?id=267
Revision 1576 - Directory Listing
Modified Fri Dec 12 00:30:06 2008 UTC (4 years, 5 months ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/40_hppa_asm.dpatch: Possible fix for arch-specific FTBFS in hppa inline ASM code
Revision 1574 - Directory Listing
Modified Thu Dec 11 08:03:31 2008 UTC (4 years, 5 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/rules: replace autoconf/automake/etc. with single autoreconf call
Revision 1558 - Directory Listing
Modified Wed Nov 26 22:04:22 2008 UTC (4 years, 5 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/patches/50_type2bonds.dpatch: Fix grompp freeze when using type 2 bonds (G96) and all-angle constraints.  (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=261)
Revision 1545 - Directory Listing
Modified Sat Nov 22 00:10:19 2008 UTC (4 years, 6 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Reorder update-alternatives priorities of the MPI packages
Revision 1534 - Directory Listing
Modified Mon Nov 10 22:27:34 2008 UTC (4 years, 6 months ago) by nbreen-guest
Original Path: unstable/gromacs 
UNRELEASED -> unstable
Revision 1533 - Directory Listing
Modified Mon Nov 10 21:38:38 2008 UTC (4 years, 6 months ago) by nbreen-guest
Original Path: unstable/gromacs 
* New upstream version, 4.0.2.
* Remove 10_manpages.dpatch - merged upstream.
* Suggest OpenMPI for new installations, not LAM.
Revision 1532 - Directory Listing
Modified Sun Nov 9 02:50:29 2008 UTC (4 years, 6 months ago) by nbreen-guest
Original Path: unstable/gromacs 
preliminary 4.0.1 update
Revision 1523 - Directory Listing
Modified Wed Oct 29 22:45:06 2008 UTC (4 years, 6 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Add explicit Build-Depends on libtool.
Revision 1521 - Directory Listing
Modified Wed Oct 22 19:29:36 2008 UTC (4 years, 7 months ago) by nbreen-guest
Original Path: unstable/gromacs 
man/gromacs.7: Recategorize some programs under more suitable section headers.
Revision 1519 - Directory Listing
Modified Tue Oct 14 21:19:23 2008 UTC (4 years, 7 months ago) by nbreen-guest
Original Path: unstable/gromacs 
* 10_manpages.dpatch, man/*: last batch of changes for now - turn all
  ambiguous hyphens into explicit dashes (lintian info check)
* patches/50_confio.dpatch: pull fix for segfault in src/gmxlib/confio.c
  from upstream CVS
Revision 1515 - Directory Listing
Modified Mon Oct 13 20:37:39 2008 UTC (4 years, 7 months ago) by nbreen-guest
Original Path: unstable/gromacs 
* patches/10_manpages.dpatch: eliminate some GROFF errors.
* man/mdrun_mpi.*.1: resync against new upstream mdrun.1.
* man/demux.1, man/xplor2gmx.1: new pages (no upstream docs).
* man/average.1: delete - binary no longer shipped.
  - man/gromacs.7: edit accordingly.
* patches/11_readme.dpatch: provide reference for GROMACS 4 paper.
* rules: rename xplor2gmx.pl, demux.pl without their .pl extensions;
  install their man pages *without* _d variants; move --with-gsl config
  parameter to the non-MPI builds only.
* gromacs.README.Debian: mention xplor2gmx, demux renaming.
* lintian-overrides.gromacs: update list of man pages.
Revision 1514 - Directory Listing
Modified Mon Oct 13 00:48:01 2008 UTC (4 years, 7 months ago) by nbreen-guest
Original Path: unstable/gromacs 
patches/10_manpages.dpatch, man/gromacs.7: Resync and update man page modifications, gromacs(7) index
Revision 1513 - Directory Listing
Modified Sun Oct 12 22:03:04 2008 UTC (4 years, 7 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/patches: delete 05_autoconf_gsl.dpatch, 40_missing_cpp.dpatch - both fixed upstream
Revision 1512 - Directory Listing
Modified Sun Oct 12 21:49:55 2008 UTC (4 years, 7 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Updating packaging for 4.0 release (first part - debian/rules, debian/control, local man pages)
Revision 1499 - Directory Listing
Modified Wed Aug 20 19:31:46 2008 UTC (4 years, 9 months ago) by nbreen-guest
Original Path: unstable/gromacs 
New patch 05_autoconf_gsl corrects failure to set LIBS=-lgsl properly in configure step; g_kinetics(1) man page updated
Revision 1498 - Directory Listing
Modified Mon Aug 11 06:30:34 2008 UTC (4 years, 9 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/rules: also remove unnecessary duplication of dh_installdeb
Revision 1497 - Directory Listing
Modified Mon Aug 11 06:19:56 2008 UTC (4 years, 9 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/rules: remove obsolete DEB_BUILD_OPTIONS=parallel comment - hasn't been hard-coded to 4 for a while
Revision 1413 - Directory Listing
Modified Tue Jun 10 01:53:53 2008 UTC (4 years, 11 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Create debian/README.source; update to Standards-Version 3.8.0
Revision 1260 - Directory Listing
Modified Sun Mar 9 21:39:32 2008 UTC (5 years, 2 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/gromacs-data.doc-base (Section): Fixed accordingly to latest
  doc-base policy 0.8.10.
Revision 1245 - Directory Listing
Modified Sun Mar 9 06:08:34 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Revert LIBS setting for lgsl - it doesn't solve the problem
Revision 1243 - Directory Listing
Modified Sat Mar 8 21:10:11 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Remove libxml build-dep; tweak libgsl configuration
Revision 1237 - Directory Listing
Modified Fri Mar 7 18:31:22 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Remove extraneous PDF exceptions from dh_compress calls
Revision 1218 - Directory Listing
Modified Tue Mar 4 05:30:27 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
typo
Revision 1217 - Directory Listing
Modified Tue Mar 4 05:26:55 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Package reorganization, part II: eliminate gromacs-doc package, move all arch-indep content into new gromacs-data package
Revision 1216 - Directory Listing
Modified Tue Mar 4 05:25:38 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Remove PDF manual as sources are not currently available; update documentation to give location online
Revision 1215 - Directory Listing
Modified Tue Mar 4 05:00:04 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Switch lintian binary-without-manpage override to an explicit list, in case upstream sneaks in undocumented new binaries in a point release (again)
Revision 1214 - Directory Listing
Modified Tue Mar 4 04:38:12 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
linda no longer exists -> remove linda override
Revision 1213 - Directory Listing
Modified Tue Mar 4 04:37:09 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Additional man page fixes and typos
Revision 1212 - Directory Listing
Modified Tue Mar 4 02:12:56 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Write preliminary man pages for newly-added, undocumented commands
Revision 1200 - Directory Listing
Modified Mon Mar 3 20:57:18 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
more man page syntax error corrections
Revision 1199 - Directory Listing
Modified Mon Mar 3 20:52:19 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
man pages: resync against upstream CVS, fix 18 lintian-reported syntax errors
Revision 1197 - Directory Listing
Modified Mon Mar 3 18:59:42 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Properly install alternatives for single _and_ double precision mdrun binaries
Revision 1170 - Directory Listing
Modified Sun Mar 2 00:14:20 2008 UTC (5 years, 2 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Preparing for new upstream release
Revision 1126 - Directory Listing
Modified Sun Feb 24 01:33:38 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/man/average.1: Minor ROFF improvements, hyphen/minus and typo
  fixes.
* debian/man/g_nmtraj.1: Ditto.
* debian/man/luck.1: Ditto.
Revision 1125 - Directory Listing
Modified Sun Feb 24 00:28:00 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
gromacs (3.3.3~pre1-2) UNRELEASED
Revision 1075 - Directory Listing
Modified Thu Feb 14 03:16:18 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Add preinst scripts to allow migrations from already-installed /usr/share/doc/gromacs-{doc,dev} symlinks to directories
Revision 1074 - Directory Listing
Modified Thu Feb 14 03:03:43 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
gromacs-doc no longer needs to Depend on gromacs; downgrading to Recommends
Revision 1073 - Directory Listing
Modified Thu Feb 14 02:27:36 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Final changes for 3.3.3~pre1-1
Revision 1072 - Directory Listing
Modified Wed Feb 13 02:11:35 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/TODO: Some comments about the get-orig-source target idea and the
  configure patch and solutions to this problem.
Revision 1071 - Directory Listing
Modified Wed Feb 13 02:03:25 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/rules: Moved the config.* copying from clean to configure to avoid
  putting these differences into the diff (yes, it only works for the first
  build run, but it seems common to do this).
  
  Then a second try to use --program-transform-name together with --program-suffix.
  The other solution has not been removed. Instead I just commented it. Please test
  if the resulting binary package contains all expected binaries.
Revision 1066 - Directory Listing
Modified Wed Feb 13 01:40:23 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Large-scale cleanup in progress
Revision 1064 - Directory Listing
Modified Tue Feb 12 23:26:30 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
TODO updates
Revision 1042 - Directory Listing
Modified Sun Feb 10 03:00:48 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Add versioned Build-Depends on libmpich1.0-dev to the first version built with gfortran (f90 transition)
Revision 1032 - Directory Listing
Modified Sat Feb 9 00:38:59 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/gromacs-doc.doc-base (Section): Fixed accordingly to menu policy.
Revision 1031 - Directory Listing
Modified Sat Feb 9 00:32:37 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/copyright: Added copyright information to satisfy lintian.
Revision 1030 - Directory Listing
Modified Fri Feb 8 09:07:25 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/control (Suggests): Fixed a debcheck issue - gromacs-openmpi should
  only be suggested on supported architectures.
Revision 1029 - Directory Listing
Modified Fri Feb 8 09:04:46 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* some more thoughts
Revision 1028 - Directory Listing
Modified Fri Feb 8 08:51:32 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
Added a TODO file containing some comments and explanations about the recent
work on debian/rules, which you can find at http://debian.wgdd.de/temp/rules.
Please test and feel free to add comments to this file, answer questions,
whatever ... :)
Revision 1026 - Directory Listing
Modified Fri Feb 8 03:55:45 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
Set mergeWithUpstream mode.
Revision 1022 - Directory Listing
Modified Wed Feb 6 02:23:19 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/changelog: Sorry, I thought gromacs 3.3.3~pre1-1 has already been
  uploaded. Renaming -2 and putting entry into -1.
Revision 1021 - Directory Listing
Modified Tue Feb 5 17:52:54 2008 UTC (5 years, 3 months ago) by dleidert-guest
Original Path: unstable/gromacs 
* debian/watch: Added pre-release version handling.
Revision 1017 - Directory Listing
Modified Sun Feb 3 20:10:08 2008 UTC (5 years, 3 months ago) by nbreen-guest
Original Path: unstable/gromacs 
New upstream (pre-)release
Revision 982 - Directory Listing
Modified Tue Jan 15 02:24:46 2008 UTC (5 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
debian/rules: add .NOTPARALLEL target (can't compile multiple build-*
targets in parallel on one source tree); disable FORTRAN inner loops
on alpha for gromacs-openmpi due to linking problems, pending fix from
the openmpi team
Revision 924 - Directory Listing
Modified Mon Dec 31 19:05:27 2007 UTC (5 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
[gromacs] debian/rules: stop compiling twice
Revision 918 - Directory Listing
Added Wed Dec 26 23:31:45 2007 UTC (5 years, 4 months ago) by nbreen-guest
Original Path: unstable/gromacs 
Initial transfer to debichem svn
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