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#!/usr/bin/make -f
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# -*- makefile -*-
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# Uncomment this to turn on verbose mode.
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#export DH_VERBOSE=1
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CFLAGS = -Wall -g
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ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
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CFLAGS += -O0
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else
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CFLAGS += -O2
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endif
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.NOTPARALLEL:
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include /usr/share/dpatch/dpatch.make
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configure: configure-stamp
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configure-stamp:
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dh_testdir
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touch configure-stamp
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build: patch build-stamp
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build-stamp: configure-stamp
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dh_testdir
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$(MAKE) -C src all
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$(MAKE) -C debian/manpages.d
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# build documentation manually (docs/makefile is not useable)
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cat src/models/*.tex src/dynlibsrc/*.tex | perl docs/gettex.pl > docs/temp.tex
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cat docs/wise2api.tex docs/temp.tex docs/apiend.tex > docs/api.tex
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# <bugfix>
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sed -i 's/ sw_wrap / sw\\_wrap /' docs/api.tex
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sed -i 's/label{module_sequence\\_codon}/label{module_sequence_codon}/' docs/api.tex
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sed -i 's/Wise2::GeneParameter21_wrap/Wise2::GeneParameter21\\_wrap/' docs/api.tex
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# </bugfix>
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cd docs && pdflatex api.tex
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cd docs && pdflatex api.tex
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cd docs && pdflatex dynamite.tex
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cd docs && pdflatex dynamite.tex
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# cd docs && ps2pdf genewise6.eps # segfaults on s390
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# cd docs && ps2pdf genewise21.eps
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cd docs && pdflatex wise2.tex
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cd docs && pdflatex wise2.tex
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cd docs && hevea api.tex
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cd docs && hevea api.tex
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cd docs && hevea dynamite.tex
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cd docs && hevea dynamite.tex
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cd docs && hevea wise2.tex
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cd docs && hevea wise2.tex
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mkdir -p docs/api
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mkdir -p docs/dynamite
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mkdir -p docs/wise2
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mv docs/api.html docs/api
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mv docs/dynamite.html docs/dynamite
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mv docs/wise2.html docs/wise2
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touch $@
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clean: unpatch
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dh_testdir
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dh_testroot
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rm -f build-stamp configure-stamp
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$(MAKE) -C src clean
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$(MAKE) -C debian/manpages.d clean
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# bugfix
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$(RM) -r src/oldbin
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for i in dba psw dnal genomewise pswdb scanwise estwise genewise sywise genewisedb promoterwise pseudowise estwisedb; do $(RM) src/modules/$$i; done
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$(RM) src/network/scanwise_server
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# clean documentation
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$(RM) docs/temp.tex
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$(RM) docs/api.*
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$(RM) docs/wise2.image.tex
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$(RM) docs/*.pdf
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$(RM) docs/*.aux
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$(RM) docs/*.log
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$(RM) docs/*.toc
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$(RM) docs/*.pdf
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$(RM) docs/*.dvi
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$(RM) docs/*.ps
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$(RM) docs/*.4ct
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$(RM) docs/*.4tc
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$(RM) docs/*.css
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$(RM) docs/*.idv
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$(RM) docs/*.lg
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$(RM) docs/*.tmp
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$(RM) docs/*.xref
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$(RM) docs/*.haux
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$(RM) docs/*.htoc
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$(RM) docs/*.html
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$(RM) -r docs/api
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$(RM) -r docs/dynamite
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$(RM) -r docs/wise2
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dh_clean
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install: build
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dh_testdir
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dh_testroot
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dh_clean -k
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dh_installdirs
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# $(MAKE) install DESTDIR=$(CURDIR)/debian/wise
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install -m 755 src/bin/* debian/wise/usr/bin
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install -m 755 src/models/genomewise debian/wise/usr/bin
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binary-indep: build install
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dh_testdir -i
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dh_testroot -i
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dh_installchangelogs -i
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dh_installdocs -i
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dh_installexamples -i
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dh_installman -i
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dh_link -i
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dh_strip -i
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dh_compress -i
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dh_fixperms -i
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dh_installdeb -i
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dh_gencontrol -i
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dh_md5sums -i
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dh_builddeb -i
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binary-arch: build install
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dh_testdir -a
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dh_testroot -a
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dh_installchangelogs -a
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dh_installdocs -a
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dh_installexamples -a
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dh_installman -a
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dh_link -a
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dh_strip -a
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dh_compress -a
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dh_fixperms -a
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dh_installdeb -a
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dh_shlibdeps -a
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dh_gencontrol -a
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dh_md5sums -a
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dh_builddeb -a
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binary: binary-indep binary-arch
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.PHONY: build clean binary-indep binary-arch binary install configure
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