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Source: sibsim4
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Section: science
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Priority: optional
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Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
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Uploaders: Nelson A. de Oliveira <naoliv@debian.org>
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Build-Depends: cdbs, debhelper (>= 5)
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Standards-Version: 3.7.2
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XS-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/sibsim4/trunk/
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XS-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/sibsim4
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Homepage: http://sibsim4.sourceforge.net/
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Package: sibsim4
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Architecture: any
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Depends: ${shlibs:Depends}, ${misc:Depends}
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Description: align expressed RNA sequences on a DNA template
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The SIBsim4 project is based on sim4, which is a program designed to align
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an expressed DNA sequence with a genomic sequence, allowing for introns.
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SIBsim4 is a fairly extensive rewrite of the original code with the following
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goals:
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* speed improvement;
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* allow large, chromosome scale, DNA sequences to be used;
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* provide more detailed output about splice types;
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* provide more detailed output about polyA sites;
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* misc code cleanups and fixes.
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