Contents of /trunk/packages/seaview/trunk/debian/changelog

seaview (1:2.4-2) UNRELEASED; urgency=low

  * debian/copyright, debian/seaview.1*: added year 2008 to copyright
    statements.
  * Updated my email address.

 -- Charles Plessy <plessy@debian.org>  Sun, 27 Apr 2008 17:02:54 +0900

seaview (1:2.4-1) unstable; urgency=low

  * New upstream version:
    - Version 2.3: corrrected bug if adding/deleting/moving sequences when in
      'view as proteins' mode.
    - Version 2.4: PHYLIP format: user can customize the max length of names.
  * debian/control:
    - Suggests: muscle, clustalw (non-free). Seaview detects if they
     are not present and grays the corresponding option.
    - Allows the upload by Debian Maintainers.
    - Checked that the package conforms to Policy 3.7.3.
  * debian/copyright: made machine-readable
  * MIME support:
    - debian/seaview.sharedmimeinfo associates .aln suffix and
      text/x-clustalw-alignment, debian/seaview.mime and
      debian/seaview.desktop associate seaview with this MIME type.
    - debian/rules executes dh_installmime.
  * debian/seaview.1.xml: increased version number to 2.4 (no other changes
    needed)
  * debian/seaview.1: rebuilt with DocBook XSL Stylesheets v1.73.2.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 12 Jan 2008 15:30:07 +0900

seaview (1:2.2-1) unstable; urgency=low

  [ Nelson A. de Oliveira ]
  * Updated watch file.

  [ Charles Plessy ]
  * New upstream release:
    - introduced interface to external alignment programs.
    - Work with several alignment windows; copy and paste sequence data
      between them.
  * Moved the Homepage: field out from the package's description.
  * Removed the XS- prefix of the Vcs fields in debian/control
  * Building the manpage offline: added seaview.1 to the package, and
    removed xsltproc, docbook-xml and docbook-xsl from the build-dependencies.
  * Patches to Seaview:
    - Refreshed.
    - Suppressed xterm_to_x-terminal-emulator.patch : strange communication
      problems happen between seaview and some terminal emulators, such as
      gnome-terminal or konsole.
    - Hardcoded the path to seaview_align.sh.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sun, 18 Nov 2007 23:35:29 +0900

seaview (1:2.0-1) unstable; urgency=low

  * New upstream release. Use "Props:View as proteins" to align
    protein-coding DNA sequences.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Fri, 24 Aug 2007 00:02:33 +0900

seaview (20070615-1) unstable; urgency=low

  * New upstream release correcting problems with lowercase characters.
  * Converted the SVN repository which hosts the Debian source package
    to use the MergeWithUpstream option.
  * Moved examples to debian/examples.
  * Using 'quilt' as a patch management system instead of 'dpatch'.
  * Managing all the changes to the sources whith quilt.
  * Adding $(misc-Depends) in debian/control.
  * Debian Menu transtion: moving entry to Applications/Science/Biology.
  * Manpage: automatic date update; upgrading revision number.
  * Adding bibliographic reference to debian/copyright and debian/control.
  * Dropping 'config.h' patch from .diff.gz.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 21 Jul 2007 12:43:23 +0900

seaview (20070417-1) unstable; urgency=low

  * New upstream release adding processing of comments in FASTA format.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sun, 29 Apr 2007 22:51:23 +0900

seaview (20070215-1) unstable; urgency=low

  * New upstream release, adding a new "Edit sequence" option in the Edit menu.
  * Updated manpage and converted it to Unicode.
  * Add Subversion repository URL to debian/control.
  * Including /usr/share/dpatch/dpatch.make in debian/rules.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Thu,  5 Apr 2007 09:38:08 +0900

seaview (20061005-1) unstable; urgency=low

  * New upstream release. The xpm icon and its sources are now included in.
  * New maintainer email: the previous one was not the intended mailing list.
  * Removing options passed to x-terminal-emulator if they are not a MUST in
    the policy chapter 11.8.3.
  * Improved manpage.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 28 Oct 2006 17:27:02 +0900

seaview (20060918-1) unstable; urgency=low

  * New upstream release (Closes: #357585)
  * Uses muscle instead of clustalw, therefore moving to main (Closes: #357587)
  * Update debian/copyright: the current licence of seaview is GPL (Closes: #357581)
  * Conforms to Standards version 3.7.2 and debhelper compatibility level 5.
  * Collective maintainance: Debian-Med Packaging Team is the new Maintainer.
  * Outputs PS instead of PDF as Debian can not support the PDFlib.
  * Uses x-terminal-emulator instead of xterm.
  * Support for freedesktop menus, and nice new icon.
  * Updated manpage.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Thu, 28 Sep 2006 12:13:53 +0900

seaview (20021127-4.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Medium-urgency upload for RC bugfix.
  * Rebuild for the C++ ABI transition.  Closes: #328175.

 -- Steve Langasek <vorlon@debian.org>  Thu, 22 Sep 2005 02:07:07 -0700

seaview (20021127-4) unstable; urgency=low

  * Cleaned up debian/rules file.
  * Conforms to Standards version 3.6.1.
        
 -- Brian R Furry <bfurry@nac.net>  Sun, 30 Nov 2003 00:04:02 +0000

seaview (20021127-3) unstable; urgency=low

  * Adopted by new maintainer; closes: 100261
  * Conforms to Standards version 3.6.0.

 -- Brian R Furry <bfurry@nac.net>  Thu, 11 Sep 2003 21:12:40 -0400

seaview (20021127-2.2) unstable; urgency=low

  * NMU.
  * Downgrade dependency on clustalw to a recommendation, since we don't
    absolutely need it and it doesn't exist on mips(el).

 -- Aaron M. Ucko <ucko@debian.org>  Tue, 17 Jun 2003 13:22:55 -0400

seaview (20021127-2.1) unstable; urgency=low

  * NMU.
  * Rebuild with Xft2-based FLTK (>= 1.1.3-2.1).

 -- Aaron M. Ucko <ucko@debian.org>  Wed,  7 May 2003 20:36:02 -0400

seaview (20021127-2) unstable; urgency=low

  * QA upload.
  * Built with g++ 3.2 and libfltk1.1c102 (closes: #176147).

 -- Colin Watson <cjwatson@debian.org>  Sat, 11 Jan 2003 02:50:11 +0000

seaview (20021127-1) unstable; urgency=low

  * QA upload.
  * New upstream release.
  * Conforms to Standards version 3.5.8.

 -- Matej Vela <vela@debian.org>  Sun,  1 Dec 2002 22:14:33 +0100

seaview (20021010-1) unstable; urgency=low

  * QA upload.
  * New upstream release.
  * Provide a config.h for old_file_chooser.cxx.
  * debian/menu: Use `section=Apps/Science hints=Biology' (see #162812).

 -- Matej Vela <vela@debian.org>  Sat, 19 Oct 2002 21:26:13 +0200

seaview (20020409-1) unstable; urgency=low

  * QA upload.
  * New upstream version (there's no version number in the sources).
    Closes: #128357.
  * align.cxx:
    - Handle temporary files securely (seaview 0.0 is not vulnerable).
    - Use x-terminal-emulator rather than xterm or rxvt.
  * seaview.1:
    - List NEXUS among the supported formats.
    - `-reducefonts' is no longer accepted.
  * Switched to debhelper 4.
  * Moved /usr/lib/seaview/seaview.help to /usr/share/seaview as
    architecture-independent.
  * Changed section from contrib/misc to contrib/science.
  * Added menu support.
  * debian/changelog: Remove obsolete Emacs local variables.
  * Conforms to Standards version 3.5.7.

 -- Matej Vela <vela@debian.org>  Fri, 20 Sep 2002 18:25:47 +0200

seaview (0.0-6.1) unstable; urgency=low

  * NMU
  * Update to build against XForms 0.89.  (closes: Bug#118138)

 -- Doug Porter <dsp@debian.org>  Mon, 12 Nov 2001 11:43:51 -0500

seaview (0.0-6) unstable; urgency=low

  * Maintainer set to Debian QA Group <packages@qa.debian.org>.

 -- Adrian Bunk <bunk@fs.tum.de>  Fri, 24 Aug 2001 23:58:22 +0200

seaview (0.0-5) unstable; urgency=low

  * Adopted by new maintainer; closes: #92802
  * Moved all doc files to /usr/share/doc; closes: #91647
  * Moved manpage to /usr/share/man; closes: #91064
  * Updated to latest policy, and added Build-Depends.
  * Removed some unnecessary files in debian dir.

 -- Dr. Guenter Bechly <gbechly@debian.org>  Sat,  7 Apr 2001 18:00:30 +0200

seaview (0.0-4) unstable; urgency=low

  * A few examples added
  * New bug in seaview_align.sh, this time fixed seriously.

 -- Stephane Bortzmeyer <bortzmeyer@debian.org>  Thu,  3 Jun 1999 10:07:55 +0200

seaview (0.0-3) unstable; urgency=low

  * Big bug in seaview_align.sh (not all parameters were passed).

 -- Stephane Bortzmeyer <bortzmeyer@debian.org>  Wed, 26 May 1999 14:39:26 +0200

seaview (0.0-2) unstable; urgency=low

  * No longer depends on c-shell or xterm. Closes #34700
  * Manual page. Closes #34615

 -- Stephane Bortzmeyer <bortzmeyer@debian.org>  Tue, 25 May 1999 14:42:15 +0200

seaview (0.0-1) unstable; urgency=low

  * Initial Release.

 -- Stephane Bortzmeyer <bortzmeyer@debian.org>  Mon,  1 Mar 1999 16:41:51 +0100
1	charles-guest	1520	seaview (1:2.4-2) UNRELEASED; urgency=low
2
3			* debian/copyright, debian/seaview.1*: added year 2008 to copyright
4	plessy	1813	statements.
5			* Updated my email address.
6	charles-guest	1520
7	plessy	1813	-- Charles Plessy <plessy@debian.org> Sun, 27 Apr 2008 17:02:54 +0900
8	charles-guest	1520
9	naoliv	1517	seaview (1:2.4-1) unstable; urgency=low
10	charles-guest	883
11	charles-guest	1514	* New upstream version:
12			- Version 2.3: corrrected bug if adding/deleting/moving sequences when in
13			'view as proteins' mode.
14			- Version 2.4: PHYLIP format: user can customize the max length of names.
15	charles-guest	1121	* debian/control:
16			- Suggests: muscle, clustalw (non-free). Seaview detects if they
17			are not present and grays the corresponding option.
18			- Allows the upload by Debian Maintainers.
19	charles-guest	1122	- Checked that the package conforms to Policy 3.7.3.
20	charles-guest	1520	* debian/copyright: made machine-readable
21	charles-guest	1121	* MIME support:
22			- debian/seaview.sharedmimeinfo associates .aln suffix and
23			text/x-clustalw-alignment, debian/seaview.mime and
24			debian/seaview.desktop associate seaview with this MIME type.
25			- debian/rules executes dh_installmime.
26	charles-guest	1520	* debian/seaview.1.xml: increased version number to 2.4 (no other changes
27			needed)
28	charles-guest	1514	* debian/seaview.1: rebuilt with DocBook XSL Stylesheets v1.73.2.
29	charles-guest	883
30	charles-guest	1121	-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 12 Jan 2008 15:30:07 +0900
31	charles-guest	883
32	charles-guest	770	seaview (1:2.2-1) unstable; urgency=low
33	naoliv	414
34	charles-guest	441	[ Nelson A. de Oliveira ]
35	naoliv	414	* Updated watch file.
36
37	charles-guest	441	[ Charles Plessy ]
38	charles-guest	775	* New upstream release:
39			- introduced interface to external alignment programs.
40			- Work with several alignment windows; copy and paste sequence data
41			between them.
42	charles-guest	441	* Moved the Homepage: field out from the package's description.
43	charles-guest	770	* Removed the XS- prefix of the Vcs fields in debian/control
44			* Building the manpage offline: added seaview.1 to the package, and
45			removed xsltproc, docbook-xml and docbook-xsl from the build-dependencies.
46	charles-guest	838	* Patches to Seaview:
47			- Refreshed.
48			- Suppressed xterm_to_x-terminal-emulator.patch : strange communication
49			problems happen between seaview and some terminal emulators, such as
50			gnome-terminal or konsole.
51			- Hardcoded the path to seaview_align.sh.
52	naoliv	414
53	charles-guest	838	-- Charles Plessy <charles-debian-nospam@plessy.org> Sun, 18 Nov 2007 23:35:29 +0900
54	charles-guest	441
55	charles-guest	413	seaview (1:2.0-1) unstable; urgency=low
56
57			* New upstream release. Use "Props:View as proteins" to align
58			protein-coding DNA sequences.
59
60			-- Charles Plessy <charles-debian-nospam@plessy.org> Fri, 24 Aug 2007 00:02:33 +0900
61
62	charles-guest	360	seaview (20070615-1) unstable; urgency=low
63
64			* New upstream release correcting problems with lowercase characters.
65			* Converted the SVN repository which hosts the Debian source package
66			to use the MergeWithUpstream option.
67			* Moved examples to debian/examples.
68	charles-guest	364	* Using 'quilt' as a patch management system instead of 'dpatch'.
69	charles-guest	365	* Managing all the changes to the sources whith quilt.
70			* Adding $(misc-Depends) in debian/control.
71			* Debian Menu transtion: moving entry to Applications/Science/Biology.
72			* Manpage: automatic date update; upgrading revision number.
73			* Adding bibliographic reference to debian/copyright and debian/control.
74	charles-guest	367	* Dropping 'config.h' patch from .diff.gz.
75	charles-guest	360
76	charles-guest	367	-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 21 Jul 2007 12:43:23 +0900
77	charles-guest	360
78	charles-guest	281	seaview (20070417-1) unstable; urgency=low
79	charles-guest	280
80			* New upstream release adding processing of comments in FASTA format.
81
82	charles-guest	281	-- Charles Plessy <charles-debian-nospam@plessy.org> Sun, 29 Apr 2007 22:51:23 +0900
83	charles-guest	280
84	charles-guest	245	seaview (20070215-1) unstable; urgency=low
85	charles-guest	224
86	charles-guest	245	* New upstream release, adding a new "Edit sequence" option in the Edit menu.
87			* Updated manpage and converted it to Unicode.
88	charles-guest	228	* Add Subversion repository URL to debian/control.
89			* Including /usr/share/dpatch/dpatch.make in debian/rules.
90	charles-guest	224
91	charles-guest	245	-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 5 Apr 2007 09:38:08 +0900
92	charles-guest	224
93	charles-guest	154	seaview (20061005-1) unstable; urgency=low
94	charles-guest	142
95	charles-guest	154	* New upstream release. The xpm icon and its sources are now included in.
96	charles-guest	150	* New maintainer email: the previous one was not the intended mailing list.
97			* Removing options passed to x-terminal-emulator if they are not a MUST in
98			the policy chapter 11.8.3.
99			* Improved manpage.
100	charles-guest	142
101	charles-guest	245	-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 28 Oct 2006 17:27:02 +0900
102	charles-guest	142
103	charles-guest	117	seaview (20060918-1) unstable; urgency=low
104
105			* New upstream release (Closes: #357585)
106			* Uses muscle instead of clustalw, therefore moving to main (Closes: #357587)
107			* Update debian/copyright: the current licence of seaview is GPL (Closes: #357581)
108	charles-guest	119	* Conforms to Standards version 3.7.2 and debhelper compatibility level 5.
109			* Collective maintainance: Debian-Med Packaging Team is the new Maintainer.
110	charles-guest	133	* Outputs PS instead of PDF as Debian can not support the PDFlib.
111	charles-guest	119	* Uses x-terminal-emulator instead of xterm.
112			* Support for freedesktop menus, and nice new icon.
113	charles-guest	135	* Updated manpage.
114	charles-guest	117
115	charles-guest	135	-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 28 Sep 2006 12:13:53 +0900
116	charles-guest	117
117	charles-guest	114	seaview (20021127-4.1) unstable; urgency=medium
118
119			* Non-maintainer upload.
120			* Medium-urgency upload for RC bugfix.
121			* Rebuild for the C++ ABI transition. Closes: #328175.
122
123			-- Steve Langasek <vorlon@debian.org> Thu, 22 Sep 2005 02:07:07 -0700
124
125			seaview (20021127-4) unstable; urgency=low
126
127			* Cleaned up debian/rules file.
128			* Conforms to Standards version 3.6.1.
129
130			-- Brian R Furry <bfurry@nac.net> Sun, 30 Nov 2003 00:04:02 +0000
131
132			seaview (20021127-3) unstable; urgency=low
133
134			* Adopted by new maintainer; closes: 100261
135			* Conforms to Standards version 3.6.0.
136
137			-- Brian R Furry <bfurry@nac.net> Thu, 11 Sep 2003 21:12:40 -0400
138
139			seaview (20021127-2.2) unstable; urgency=low
140
141			* NMU.
142			* Downgrade dependency on clustalw to a recommendation, since we don't
143			absolutely need it and it doesn't exist on mips(el).
144
145			-- Aaron M. Ucko <ucko@debian.org> Tue, 17 Jun 2003 13:22:55 -0400
146
147			seaview (20021127-2.1) unstable; urgency=low
148
149			* NMU.
150			* Rebuild with Xft2-based FLTK (>= 1.1.3-2.1).
151
152			-- Aaron M. Ucko <ucko@debian.org> Wed, 7 May 2003 20:36:02 -0400
153
154			seaview (20021127-2) unstable; urgency=low
155
156			* QA upload.
157			* Built with g++ 3.2 and libfltk1.1c102 (closes: #176147).
158
159			-- Colin Watson <cjwatson@debian.org> Sat, 11 Jan 2003 02:50:11 +0000
160
161			seaview (20021127-1) unstable; urgency=low
162
163			* QA upload.
164			* New upstream release.
165			* Conforms to Standards version 3.5.8.
166
167			-- Matej Vela <vela@debian.org> Sun, 1 Dec 2002 22:14:33 +0100
168
169			seaview (20021010-1) unstable; urgency=low
170
171			* QA upload.
172			* New upstream release.
173			* Provide a config.h for old_file_chooser.cxx.
174			* debian/menu: Use `section=Apps/Science hints=Biology' (see #162812).
175
176			-- Matej Vela <vela@debian.org> Sat, 19 Oct 2002 21:26:13 +0200
177
178			seaview (20020409-1) unstable; urgency=low
179
180			* QA upload.
181			* New upstream version (there's no version number in the sources).
182			Closes: #128357.
183			* align.cxx:
184			- Handle temporary files securely (seaview 0.0 is not vulnerable).
185			- Use x-terminal-emulator rather than xterm or rxvt.
186			* seaview.1:
187			- List NEXUS among the supported formats.
188			- `-reducefonts' is no longer accepted.
189			* Switched to debhelper 4.
190			* Moved /usr/lib/seaview/seaview.help to /usr/share/seaview as
191			architecture-independent.
192			* Changed section from contrib/misc to contrib/science.
193			* Added menu support.
194			* debian/changelog: Remove obsolete Emacs local variables.
195			* Conforms to Standards version 3.5.7.
196
197			-- Matej Vela <vela@debian.org> Fri, 20 Sep 2002 18:25:47 +0200
198
199			seaview (0.0-6.1) unstable; urgency=low
200
201			* NMU
202			* Update to build against XForms 0.89. (closes: Bug#118138)
203
204			-- Doug Porter <dsp@debian.org> Mon, 12 Nov 2001 11:43:51 -0500
205
206			seaview (0.0-6) unstable; urgency=low
207
208			* Maintainer set to Debian QA Group <packages@qa.debian.org>.
209
210			-- Adrian Bunk <bunk@fs.tum.de> Fri, 24 Aug 2001 23:58:22 +0200
211
212			seaview (0.0-5) unstable; urgency=low
213
214			* Adopted by new maintainer; closes: #92802
215			* Moved all doc files to /usr/share/doc; closes: #91647
216			* Moved manpage to /usr/share/man; closes: #91064
217			* Updated to latest policy, and added Build-Depends.
218			* Removed some unnecessary files in debian dir.
219
220			-- Dr. Guenter Bechly <gbechly@debian.org> Sat, 7 Apr 2001 18:00:30 +0200
221
222			seaview (0.0-4) unstable; urgency=low
223
224			* A few examples added
225			* New bug in seaview_align.sh, this time fixed seriously.
226
227			-- Stephane Bortzmeyer <bortzmeyer@debian.org> Thu, 3 Jun 1999 10:07:55 +0200
228
229			seaview (0.0-3) unstable; urgency=low
230
231			* Big bug in seaview_align.sh (not all parameters were passed).
232
233			-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 26 May 1999 14:39:26 +0200
234
235			seaview (0.0-2) unstable; urgency=low
236
237			* No longer depends on c-shell or xterm. Closes #34700
238			* Manual page. Closes #34615
239
240			-- Stephane Bortzmeyer <bortzmeyer@debian.org> Tue, 25 May 1999 14:42:15 +0200
241
242			seaview (0.0-1) unstable; urgency=low
243
244			* Initial Release.
245
246			-- Stephane Bortzmeyer <bortzmeyer@debian.org> Mon, 1 Mar 1999 16:41:51 +0100