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Package: samtools |
Package: samtools |
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Architecture: any |
Architecture: any |
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Depends: ${shlibs:Depends}, ${misc:Depends} |
Depends: ${shlibs:Depends}, ${misc:Depends} |
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Description: Processing sequence alignments in SAM format. |
Description: processing sequence alignments in SAM and BAM formats |
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Samtools is a set of utilities that manipulate alignments in the BAM format. |
Samtools is a set of utilities that manipulate nucleotide sequence alignments |
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It imports from and exports to the SAM (Sequence Alignment/Map) format, does |
in the BAM format. It imports from and exports to the SAM (Sequence |
| 19 |
sorting, merging and indexing, and allows to retrieve reads in any regions |
Alignment/Map) format, does sorting, merging and indexing, and allows to |
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swiftly. |
retrieve reads in any regions swiftly. It is designed to work on a stream, and |
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is able to open a BAM (not SAM) file on a remote FTP server. |
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Package: libbam-dev |
Package: libbam-dev |
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Architecture: any |
Architecture: any |
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Depends: ${shlibs:Depends}, ${misc:Depends} |
Depends: ${shlibs:Depends}, ${misc:Depends} |
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Description: libbam |
Description: manipulates nucleotide sequence alignments in BAM or SAM format |
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............ |
The BAM library provides I/O and various operations on manipulating nucleotide |
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sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence |
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Package: samtools-examples |
Alignment/Map) format. It now supports importing from or exporting to TAM, |
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Architecture: all |
sorting, merging, generating pileup, and quickly retrieval of reads overlapped |
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Depends: ${misc:Depends} |
with a specified region. |
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Description: examples |
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