Log of /trunk/packages/hmmer

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Revision 12428 - Directory Listing
Modified Mon Oct 15 14:18:09 2012 UTC (8 months ago) by lkajan-guest

moved documentation of --chkhmmskip closer to --chkali

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Revision 12427 - Directory Listing
Modified Mon Oct 15 13:44:02 2012 UTC (8 months ago) by lkajan-guest

lkajan branch for features restart from HMM model and skip last search

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Revision 12424 - Directory Listing
Modified Mon Oct 15 09:15:21 2012 UTC (8 months ago) by lkajan-guest

Branching 3.0-4 as suggested in [1].

Planned branch features:

1: jackhmmer restart from HMM model.
2: jackhmmer skip last search when all you need is the last HMM model (that is saved /before/ the last search).

Upstream plans to implement these features, see [2].

[1] http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-October/017512.html
[2] http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-October/017510.html

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Revision 11601 - Directory Listing
Modified Fri Jul 6 16:39:23 2012 UTC (11 months, 1 week ago) by lkajan-guest

moving hmmer2.3 branch into hmmer2 package in order to give hmmer version 2 its own package

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Revision 10275 - Directory Listing
Modified Tue Apr 3 10:02:49 2012 UTC (14 months, 2 weeks ago) by tille

Tagged 3.0-4

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Revision 10274 - Directory Listing
Modified Tue Apr 3 10:01:23 2012 UTC (14 months, 2 weeks ago) by tille

Fixed clean rule; upload to unstable

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Revision 10272 - Directory Listing
Modified Tue Apr 3 09:48:58 2012 UTC (14 months, 2 weeks ago) by tille

Rewritten copyright to match DEP5

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Revision 10271 - Directory Listing
Modified Tue Apr 3 09:28:10 2012 UTC (14 months, 2 weeks ago) by tille

Some general polishing 

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Revision 10266 - Directory Listing
Modified Tue Apr 3 08:54:03 2012 UTC (14 months, 2 weeks ago) by tille

dditional citation taken over from tasks file

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Revision 9702 - Directory Listing
Modified Sat Feb 18 01:23:39 2012 UTC (16 months ago) by plessy

debian/upstream: Moved DOI and PMID to the Reference namespace.

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Revision 9492 - Directory Listing
Modified Sun Jan 29 03:35:57 2012 UTC (16 months, 3 weeks ago) by plessy

Renamed debian/upstream-metadata.yaml to debian/upstream.

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Revision 5411 - Directory Listing
Modified Fri Nov 5 12:52:48 2010 UTC (2 years, 7 months ago) by moeller

Previously forgotten nicification on hmmer3

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Revision 5379 - Directory Listing
Modified Sun Oct 24 22:52:30 2010 UTC (2 years, 7 months ago) by moeller

Special Ack for patch by Gregor.

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Revision 5378 - Directory Listing
Modified Sun Oct 24 22:50:44 2010 UTC (2 years, 7 months ago) by moeller

Added patch by gregor herrmann

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Revision 5204 - Directory Listing
Modified Mon Aug 30 21:34:08 2010 UTC (2 years, 9 months ago) by moeller

Possibly fixed powerpc build failure.

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Revision 5193 - Directory Listing
Modified Fri Aug 27 06:08:26 2010 UTC (2 years, 9 months ago) by tille

Install binaries to /usr/bin instead of /bin

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Revision 5192 - Directory Listing
Modified Fri Aug 27 05:50:27 2010 UTC (2 years, 9 months ago) by tille

Tagged 3.0-1

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Revision 5191 - Directory Listing
Modified Fri Aug 27 05:47:49 2010 UTC (2 years, 9 months ago) by tille

check in as it was uploaded by Eric Talevich <etal@uga.edu>

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Revision 5015 - Directory Listing
Modified Thu Jul 8 21:44:41 2010 UTC (2 years, 11 months ago) by moeller

Updated for new binaries.

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Revision 5014 - Directory Listing
Modified Thu Jul 8 21:36:22 2010 UTC (2 years, 11 months ago) by etal-guest

Added a patch to include man files

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Revision 5008 - Directory Listing
Modified Thu Jul 8 19:49:11 2010 UTC (2 years, 11 months ago) by etal-guest

Prepared for HMMer version 3.0, without MPI (for now)

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Revision 5007 - Directory Listing
Modified Thu Jul 8 19:40:25 2010 UTC (2 years, 11 months ago) by etal-guest

Branched trunk for HMMer 2.3, making room for HMMer3

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Revision 4508 - Directory Listing
Modified Sun Jan 3 15:18:35 2010 UTC (3 years, 5 months ago) by plessy

Syntax corrections.

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Revision 4484 - Directory Listing
Modified Sun Jan 3 04:26:11 2010 UTC (3 years, 5 months ago) by plessy

Corrected PubMed field name to PMID.

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Revision 4449 - Directory Listing
Modified Wed Dec 16 04:53:15 2009 UTC (3 years, 6 months ago) by plessy

Packages enhancements, not enough to trigger an upload.

  * Enabled upstream checks in debian/rules.
  * Documented how the package is tested in debian/README.Debian
  * Switched Debhelper to mode 7 (debian/compat, debian/control).
  * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
  * Checked conformance with Policy 3.8.3 and incremented Standards-Version
    in debian/control to reflect it.

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Revision 4187 - Directory Listing
Modified Thu Oct 8 05:03:07 2009 UTC (3 years, 8 months ago) by naoliv

s/Debian-Med/Debian Med

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Revision 3626 - Directory Listing
Modified Mon Jul 13 13:53:30 2009 UTC (3 years, 11 months ago) by smoe-guest

Branched from HMMER3 ante portas

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Revision 2169 - Directory Listing
Modified Sun Jul 6 15:06:32 2008 UTC (4 years, 11 months ago) by plessy

[svn-buildpackage] Tagging hmmer (2.3.2-5)

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Revision 2168 - Directory Listing
Modified Sun Jul 6 14:50:45 2008 UTC (4 years, 11 months ago) by plessy

Repaired the changelog I broke before.

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Revision 2167 - Directory Listing
Modified Sun Jul 6 14:30:12 2008 UTC (4 years, 11 months ago) by plessy

Set MergeWithUpstream

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Revision 2166 - Directory Listing
Modified Sun Jul 6 14:27:42 2008 UTC (4 years, 11 months ago) by plessy

Added myself as Uploader, increased priority to `optional' and standards-Version: 3.8.0 (no changes needed).

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Revision 1837 - Directory Listing
Modified Thu May 8 21:15:10 2008 UTC (5 years, 1 month ago) by smoe-guest

Moved hmmer-doc from recommended to suggested since the recommended
packages now become auto-installed.

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Revision 1647 - Directory Listing
Modified Sat Mar 22 02:51:54 2008 UTC (5 years, 2 months ago) by charles-guest

Update to the latest doc-base policy.

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Revision 1475 - Directory Listing
Modified Tue Feb 26 20:12:09 2008 UTC (5 years, 3 months ago) by naoliv

Fixing tags and hmmer (just to don't say "Fixing Andreas' mess") :-P

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Revision 1474 - Directory Listing
Modified Tue Feb 26 19:45:35 2008 UTC (5 years, 3 months ago) by tille

Cleaned up Group maintenance stuff

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Revision 1473 - Directory Listing
Added Tue Feb 26 19:38:51 2008 UTC (5 years, 3 months ago) by tille

Putting hmmer packaging under version control