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Source: gbrowse
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Section: science
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Priority: optional
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Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
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XS-DM-Upload-Allowed: yes
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Uploaders: Charles Plessy <charles-debian-nospam@plessy.org>
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Build-Depends: debhelper (>= 5), bioperl (>= 1.5.2), quilt
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Standards-Version: 3.7.2
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Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gbrowse/trunk/
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Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gbrowse
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Homepage: http://www.gmod.org/wiki/index.php/GBrowse
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Package: gbrowse
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Architecture: all
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Depends: libcgi-session-perl, libtext-shellwords-perl, ${shlibs:Depends}, ${misc:Depends}
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Recommends: libdbd-mysql-perl, libdb4.4
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Description: The generic genome browser component of the GMOD project
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The 'generic genome browser' component of the Generic Model Organism Database
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toolkit (GMOD) is a combination of database and interactive Web page for
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manipulating and displaying annotations on genomes. Some of its features:
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* Simultaneous bird's eye and detailed views of the genome;
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* Scroll, zoom, center;
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* Attach arbitrary URLs to any annotation;
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* Order and appearance of tracks are customizable by administrator and
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end-user;
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* Search by annotation ID, name, or comment;
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* Supports third party annotation using GFF formats;
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* Settings persist across sessions;
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* DNA and GFF dumps;
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* Connectivity to different databases, including BioSQL and Chado;
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* Multi-language support;
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* Third-party feature loading;
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* Customizable plug-in architecture (e.g. run BLAST, dump & import many
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formats, find oligonucleotides, design primers, create restriction maps,
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edit features).
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