Log of /trunk/packages/beast-mcmc

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Revision 13140 - Directory Listing
Modified Mon Mar 4 22:22:51 2013 UTC (2 months, 2 weeks ago) by tille

New upstream version with majpr internal changes

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Revision 13138 - Directory Listing
Modified Mon Mar 4 15:11:44 2013 UTC (2 months, 2 weeks ago) by tille

Tagged 1.7.4-2

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Revision 13112 - Directory Listing
Modified Tue Feb 26 09:06:15 2013 UTC (2 months, 3 weeks ago) by osallou-guest

set to experiment as needed libhsmbeagle is in experiemental

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Revision 13111 - Directory Listing
Modified Tue Feb 26 09:05:48 2013 UTC (2 months, 3 weeks ago) by osallou-guest

adapt patch to new release

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Revision 13076 - Directory Listing
Modified Sat Feb 23 20:19:54 2013 UTC (2 months, 3 weeks ago) by osallou-guest

revert to unstable

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Revision 13075 - Directory Listing
Modified Sat Feb 23 20:09:41 2013 UTC (2 months, 3 weeks ago) by osallou-guest

set to experimental

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Revision 13074 - Directory Listing
Modified Sat Feb 23 20:02:27 2013 UTC (2 months, 3 weeks ago) by osallou

add copyright info to fix 698497

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Revision 12803 - Directory Listing
Modified Fri Jan 18 15:06:22 2013 UTC (4 months ago) by tille

Initial kickstart for flexbar

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Revision 12691 - Directory Listing
Modified Tue Dec 18 21:36:25 2012 UTC (5 months ago) by tille

Tagged 1.7.4-1

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Revision 12690 - Directory Listing
Modified Tue Dec 18 21:35:46 2012 UTC (5 months ago) by tille

Upload to experimental

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Revision 12689 - Directory Listing
Modified Tue Dec 18 21:12:45 2012 UTC (5 months ago) by tille

Versioned Depends from libhmsbeagle-java

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Revision 12688 - Directory Listing
Modified Tue Dec 18 20:55:49 2012 UTC (5 months ago) by tille

silence pdflatex for better readable build logs

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Revision 12666 - Directory Listing
Modified Mon Dec 17 16:39:08 2012 UTC (5 months ago) by tille

create soname for library

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Revision 12665 - Directory Listing
Modified Mon Dec 17 16:37:28 2012 UTC (5 months ago) by tille

Fix install and links of renamed package

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Revision 12664 - Directory Listing
Modified Mon Dec 17 16:36:32 2012 UTC (5 months ago) by tille

rename beast-mcmc-lib to libnucleotidelikelihoodcore0

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Revision 12663 - Directory Listing
Modified Mon Dec 17 15:35:22 2012 UTC (5 months ago) by tille

1.7.4 branch was merged into trunk

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Revision 12662 - Directory Listing
Modified Mon Dec 17 15:34:08 2012 UTC (5 months ago) by tille

There is no point in keeping a separate branch because beast-mcmc did not made it into wheezy anyway - (manually) merge back

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Revision 12661 - Directory Listing
Modified Mon Dec 17 15:18:02 2012 UTC (5 months ago) by tille

Get new version finally build

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Revision 12656 - Directory Listing
Modified Mon Dec 17 14:30:10 2012 UTC (5 months ago) by tille

Calculate package name

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Revision 12655 - Directory Listing
Modified Mon Dec 17 14:27:59 2012 UTC (5 months ago) by tille

use default java implementation (closes #683509)

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Revision 12636 - Directory Listing
Modified Sun Dec 16 21:51:39 2012 UTC (5 months ago) by tille

Upstream has version 1.7.4

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Revision 12635 - Directory Listing
Modified Sun Dec 16 21:47:31 2012 UTC (5 months ago) by tille

Build-Depends from SVN libhmsbeagle

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Revision 12104 - Directory Listing
Modified Fri Aug 24 08:07:53 2012 UTC (8 months, 3 weeks ago) by tille

mtj.jar is now packaged

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Revision 11652 - Directory Listing
Modified Mon Jul 9 13:15:27 2012 UTC (10 months, 1 week ago) by tille

Inject camitk preliminary packaging stuff to get the machine readable information for the tasks pages

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Revision 11587 - Directory Listing
Modified Fri Jul 6 09:48:51 2012 UTC (10 months, 1 week ago) by tille

Fix another name space conflict with beast package

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Revision 11503 - Directory Listing
Modified Fri Jun 29 15:29:32 2012 UTC (10 months, 2 weeks ago) by tille

Tagged 1.6.2-2

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Revision 11502 - Directory Listing
Modified Fri Jun 29 15:28:46 2012 UTC (10 months, 2 weeks ago) by tille

Commit uploaded version with renamed doc and example package

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Revision 11333 - Directory Listing
Modified Thu Jun 14 12:56:20 2012 UTC (11 months ago) by tille

Prepare for new upstream version

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Revision 11272 - Directory Listing
Modified Thu Jun 7 19:57:38 2012 UTC (11 months, 1 week ago) by tille

Tagged 1.6.2-1

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Revision 11271 - Directory Listing
Modified Thu Jun 7 19:57:02 2012 UTC (11 months, 1 week ago) by tille

Final fixes for lib package; upload to unstable

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Revision 11270 - Directory Listing
Modified Thu Jun 7 19:20:01 2012 UTC (11 months, 1 week ago) by tille

Finally we can target contrib rather than non-free

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Revision 11269 - Directory Listing
Modified Thu Jun 7 19:17:35 2012 UTC (11 months, 1 week ago) by tille

There are no lib/*.jar files to install any more

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Revision 11267 - Directory Listing
Modified Thu Jun 7 19:03:39 2012 UTC (11 months, 1 week ago) by tille

Revert changes for version 1.7.2; additional build-depends needed

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Revision 11264 - Directory Listing
Modified Thu Jun 7 18:45:59 2012 UTC (11 months, 1 week ago) by tille

Restore old patches from version 1.6.2 (with updates regarding the now available mtj.jar)

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Revision 11263 - Directory Listing
Modified Thu Jun 7 18:44:21 2012 UTC (11 months, 1 week ago) by tille

Add branch to keep the packaging for version 1.7.2 which needs a more recent libhmsbeagle from SVN; Target at uploading slightly outdated beast version 1.6.2 for the moment

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Revision 11208 - Directory Listing
Modified Tue Jun 5 14:53:08 2012 UTC (11 months, 2 weeks ago) by tille

Debhelper 9; More adaptions to now Debian packaged JAR files

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Revision 11207 - Directory Listing
Modified Tue Jun 5 12:47:07 2012 UTC (11 months, 2 weeks ago) by tille

Update patches to new upstream version (build untested)

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Revision 11195 - Directory Listing
Modified Mon Jun 4 13:31:40 2012 UTC (11 months, 2 weeks ago) by tille

Some more files (reliably) to remove; use xz instead of gz compression to save some MB of space

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Revision 11194 - Directory Listing
Modified Mon Jun 4 09:33:07 2012 UTC (11 months, 2 weeks ago) by tille

New upstream version; libmtj-java now available in Debian

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Revision 10975 - Directory Listing
Modified Wed May 23 20:11:52 2012 UTC (11 months, 3 weeks ago) by tille

Some cleaning up to make more sense in machine-readable gatherer

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Revision 10974 - Directory Listing
Modified Wed May 23 20:10:06 2012 UTC (11 months, 3 weeks ago) by tille

DEP5 to enable reading with machine-readable gatherer

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Revision 10896 - Directory Listing
Modified Wed May 16 14:08:01 2012 UTC (12 months ago) by tille

Take over citation information from task file

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Revision 9438 - Directory Listing
Modified Thu Jan 26 19:19:29 2012 UTC (15 months, 3 weeks ago) by tille

Copyright until 2011

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Revision 9430 - Directory Listing
Modified Wed Jan 25 12:53:26 2012 UTC (15 months, 3 weeks ago) by tille

Ironed out two further binary JAR files in the source tarball; so only one binary is left which should be kicked as well by creating a libmtj-java package (which does require some more work unfortunately)

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Revision 9362 - Directory Listing
Modified Sat Jan 21 14:07:42 2012 UTC (15 months, 4 weeks ago) by tille

Unintentionally removed new dependencies from control file - reverting latest change

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Revision 9361 - Directory Listing
Modified Sat Jan 21 13:58:10 2012 UTC (15 months, 4 weeks ago) by tille

One of the last two remaining dependencyies for beast-mcmc, package is not finished

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Revision 9355 - Directory Listing
Modified Fri Jan 20 23:00:00 2012 UTC (15 months, 4 weeks ago) by tille

Use now available Debian packaged libraries

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Revision 9351 - Directory Listing
Modified Fri Jan 20 14:08:22 2012 UTC (15 months, 4 weeks ago) by tille

Fixed Vcs fields, drop quilt from build-depends

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Revision 9266 - Directory Listing
Modified Thu Jan 12 14:02:35 2012 UTC (16 months, 1 week ago) by tille

Enhanced copyright

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Revision 9252 - Directory Listing
Modified Wed Jan 11 16:11:15 2012 UTC (16 months, 1 week ago) by tille

Do not try to patch singular upstream wrappers if we need to do massive changes to work around stupid manifest problems anyway it makes sense to provide them directly in debian/bin

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Revision 9250 - Directory Listing
Modified Wed Jan 11 13:19:31 2012 UTC (16 months, 1 week ago) by tille

Forgot to commit manifest; ensure that libraries are really shared libs; needs writing manpages

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Revision 9245 - Directory Listing
Modified Tue Jan 10 21:34:27 2012 UTC (16 months, 1 week ago) by tille

Set explicit CLASSPATH in some scripts to make them run successfully

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Revision 9134 - Directory Listing
Modified Sat Dec 31 13:46:10 2011 UTC (16 months, 2 weeks ago) by tille

Some adaptations to build new version

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Revision 9133 - Directory Listing
Modified Sat Dec 31 13:44:43 2011 UTC (16 months, 2 weeks ago) by tille

Adapted patches to new version

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Revision 8851 - Directory Listing
Modified Thu Dec 8 21:44:55 2011 UTC (17 months, 1 week ago) by tille

New upstream version, we now fetch only tagged release versions instead of current SVN

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Revision 8849 - Directory Listing
Modified Thu Dec 8 21:38:46 2011 UTC (17 months, 1 week ago) by tille

adapted get-orig-source and watch file

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Revision 8848 - Directory Listing
Modified Thu Dec 8 21:38:03 2011 UTC (17 months, 1 week ago) by tille

get-orig-source needs to be executable - work around weak svn and commit it from scratch

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Revision 6607 - Directory Listing
Modified Fri Apr 22 05:59:36 2011 UTC (2 years ago) by tille

Fixed Build Depends

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Revision 6247 - Directory Listing
Modified Fri Mar 11 22:26:07 2011 UTC (2 years, 2 months ago) by tille

Added remark of beagle.jar author about future licensing plan

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Revision 6052 - Directory Listing
Modified Mon Feb 21 21:10:06 2011 UTC (2 years, 2 months ago) by tille

Try also building tracer which does not work that way - any help is welcome

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Revision 6051 - Directory Listing
Modified Mon Feb 21 20:50:30 2011 UTC (2 years, 2 months ago) by tille

Use Debian packaged itext library

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Revision 6026 - Directory Listing
Modified Fri Feb 18 15:19:46 2011 UTC (2 years, 3 months ago) by tille

Leave only those jars in CLASSPATH which are actually needed.

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Revision 6025 - Directory Listing
Modified Fri Feb 18 15:08:27 2011 UTC (2 years, 3 months ago) by tille

Use export CLASSPATH to make sure it will be really found by applications

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Revision 6010 - Directory Listing
Modified Thu Feb 17 08:44:49 2011 UTC (2 years, 3 months ago) by tille

Use global CLASSPATH

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Revision 6009 - Directory Listing
Modified Thu Feb 17 08:28:40 2011 UTC (2 years, 3 months ago) by tille

Fix typo in CLASSPATH; do not create useless empty dirs.

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Revision 6004 - Directory Listing
Modified Wed Feb 16 17:22:19 2011 UTC (2 years, 3 months ago) by tille

Build separate example package

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Revision 6003 - Directory Listing
Modified Wed Feb 16 16:53:59 2011 UTC (2 years, 3 months ago) by tille

Remove further docs from orig.tar.gz, rebuild them in build target and care for proper cleaning in clean target

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Revision 6002 - Directory Listing
Modified Wed Feb 16 14:57:27 2011 UTC (2 years, 3 months ago) by tille

Get rid of more binary jars, rebuild prebuilded pdf files instead of shipping them in tarball (Build-Depends from texlive needs to be added!)

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Revision 5991 - Directory Listing
Modified Tue Feb 15 15:19:31 2011 UTC (2 years, 3 months ago) by tille

Added README.source

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Revision 5990 - Directory Listing
Modified Tue Feb 15 15:01:56 2011 UTC (2 years, 3 months ago) by tille

Remove some binarie jars which are just packaged for Debian, adapt CLASSPATH, use separate shell script get-orig-source (which might be usable for watch later)

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Revision 5906 - Directory Listing
Modified Sat Feb 5 15:26:27 2011 UTC (2 years, 3 months ago) by tille

Better clean target, add soname to libraries and proper links, more generic installation of docs, some cleanups

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Revision 5905 - Directory Listing
Modified Sat Feb 5 14:07:15 2011 UTC (2 years, 3 months ago) by tille

Do not compress pdf files

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Revision 5900 - Directory Listing
Modified Sat Feb 5 07:56:04 2011 UTC (2 years, 3 months ago) by tille

Add more docs which are available as pdf; fix lintian issues in menu

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Revision 5899 - Directory Listing
Modified Sat Feb 5 07:17:51 2011 UTC (2 years, 3 months ago) by tille

Split up into three binary packages: Main beast-mcmc (arch=all), beast-doc and beast-mcmc-lib (arch=any) to keep thy byte-load of arch-any packages low; moved to non-free because there are several JAR files without source and we can not sort this out for the moment; debian/rules with short dh statement; make use of debian/<pkg>.{install,manpages} files

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Revision 5897 - Directory Listing
Modified Fri Feb 4 18:58:03 2011 UTC (2 years, 3 months ago) by tille

Make sure gcc will be called with valid options and correct include path

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Revision 5896 - Directory Listing
Modified Fri Feb 4 18:40:54 2011 UTC (2 years, 3 months ago) by tille

Added quilt Build-Depends, removed series of unreleased versions which would hide ITP bug close and do not give any extra information.

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Revision 5895 - Directory Listing
Modified Fri Feb 4 17:54:23 2011 UTC (2 years, 3 months ago) by tille

Fixed build-depends for target testing/unstable; Bumped Standards-Version; Added myself to uploaders

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Revision 5696 - Directory Listing
Modified Mon Jan 24 16:50:26 2011 UTC (2 years, 3 months ago) by fxf-guest

 * New upstream release

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Revision 4850 - Directory Listing
Modified Fri May 28 15:47:43 2010 UTC (2 years, 11 months ago) by fxf-guest

Update man pages and add menu item.

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Revision 4847 - Directory Listing
Modified Wed May 26 23:09:09 2010 UTC (2 years, 11 months ago) by fxf-guest

Fix rules

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Revision 4838 - Directory Listing
Modified Tue May 25 19:16:35 2010 UTC (2 years, 11 months ago) by fxf-guest

New upstream release

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Revision 4553 - Directory Listing
Modified Tue Jan 19 20:36:53 2010 UTC (3 years, 3 months ago) by fxf-guest

beauti man page
updated patches

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Revision 4550 - Directory Listing
Modified Tue Jan 19 00:02:25 2010 UTC (3 years, 4 months ago) by fxf-guest

Fix changelog

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Revision 4549 - Directory Listing
Modified Mon Jan 18 23:59:36 2010 UTC (3 years, 4 months ago) by fxf-guest

New upstream release.
Added man page.

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Revision 4328 - Directory Listing
Modified Wed Nov 11 12:21:39 2009 UTC (3 years, 6 months ago) by fxf-guest

Compilation and package generation completed

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Revision 4245 - Directory Listing
Added Fri Oct 23 17:37:34 2009 UTC (3 years, 6 months ago) by fxf-guest

 * Iniial release of beast-mcmc