/[debian-med]/trunk/packages
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Index of /trunk/packages

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File Rev. Age Author Last log entry
 Parent Directory        
libbio-das-perl/  1567  5 years  tille  Moved Steffen Möllers work which was stalled to svn to keep track of previous w…
martj/  1571  5 years  tille  Moved Steffen Möllers work which was stalled to svn to keep track of previous w…
treeview/  1572  5 years  tille  Moved Steffen Möllers work which was stalled to svn to keep track of previous w…
haploview/  1618  5 years  smoe-guest  Smaller changes to help the build process.
solvate/  1647  5 years  charles-guest  Update to the latest doc-base policy.
dazzle/  1777  5 years  hanska-guest  debian/watch fixed.
tab2mage/  1948  5 years  hanska-guest  New upstream release
patman/  2083  4 years  plessy  [svn-inject] Applying Debian modifications to trunk
reactome/  2246  4 years  smoe-guest  This might work. Some extra help is needed to ensure that not all the jar files …
ecell/  2348  4 years  naoliv  Fixing/adding watch files
emboss-kaptain/  2348  4 years  naoliv  Fixing/adding watch files
primer3plus/  2489  4 years  plessy  [svn-inject] Applying Debian modifications to trunk
tfbs/  2745  4 years  smoe-guest  Removed redundancy.
grogui/  2747  4 years  smoe-guest  Added Debian copyright file.
kempbasu/  3461  4 years  plessy  [svn-inject] Applying Debian modifications to trunk
srf/  3822  3 years  plessy  [svn-buildpackage] Tagging srf (0.1+dfsg-1)
fastdnaml/  3880  3 years  tille  Tagged 1.2.2-9
phylip/  4140  3 years  tille  Inject current status of BioRuby
gdpc/  4161  3 years  tille  Tagged 2.2.5-1
mssstest/  4173  3 years  tille  Tagged 3.0-2
clustalw-mpi/  4187  3 years  naoliv  s/Debian-Med/Debian Med
biosquid/  4187  3 years  naoliv  s/Debian-Med/Debian Med
btk-core/  4187  3 years  naoliv  s/Debian-Med/Debian Med
molphy/  4187  3 years  naoliv  s/Debian-Med/Debian Med
fact++/  4187  3 years  naoliv  s/Debian-Med/Debian Med
gbrowse-karyotype/  4187  3 years  naoliv  s/Debian-Med/Debian Med
libsbml/  4187  3 years  naoliv  s/Debian-Med/Debian Med
dialign-t-doc/  4187  3 years  naoliv  s/Debian-Med/Debian Med
treeplot/  4187  3 years  naoliv  s/Debian-Med/Debian Med
cluster3/  4187  3 years  naoliv  s/Debian-Med/Debian Med
plasmidomics/  4187  3 years  naoliv  s/Debian-Med/Debian Med
treevolve/  4187  3 years  naoliv  s/Debian-Med/Debian Med
mage2tab/  4187  3 years  naoliv  s/Debian-Med/Debian Med
volpack/  4187  3 years  naoliv  s/Debian-Med/Debian Med
ctn/  4187  3 years  naoliv  s/Debian-Med/Debian Med
gff2ps/  4187  3 years  naoliv  s/Debian-Med/Debian Med
ctn-doc/  4187  3 years  naoliv  s/Debian-Med/Debian Med
euler2/  4187  3 years  naoliv  s/Debian-Med/Debian Med
phylographer/  4187  3 years  naoliv  s/Debian-Med/Debian Med
euler-sr/  4187  3 years  naoliv  s/Debian-Med/Debian Med
mauvealign/  4187  3 years  naoliv  s/Debian-Med/Debian Med
agdbnet/  4187  3 years  naoliv  s/Debian-Med/Debian Med
netepi-analysis/  4187  3 years  naoliv  s/Debian-Med/Debian Med
loki/  4187  3 years  naoliv  s/Debian-Med/Debian Med
kradview/  4187  3 years  naoliv  s/Debian-Med/Debian Med
vista/  4187  3 years  naoliv  s/Debian-Med/Debian Med
sim4/  4187  3 years  naoliv  s/Debian-Med/Debian Med
axpcoords/  4187  3 years  naoliv  s/Debian-Med/Debian Med
libmems/  4187  3 years  naoliv  s/Debian-Med/Debian Med
mauve/  4187  3 years  naoliv  s/Debian-Med/Debian Med
tacg/  4187  3 years  naoliv  s/Debian-Med/Debian Med
biomode/  4187  3 years  naoliv  s/Debian-Med/Debian Med
libctapimkt/  4262  3 years  tille  Fixed directory name
wise/  4287  3 years  philipp  Removed DM-Upload-Allowed: yes
emboss-explorer/  4310  3 years  plessy  Made the patch headers compliant to DEP3.
tree-puzzle/  4334  3 years  naoliv  Fix .desktop files
swissknife/  4335  3 years  moeller  Idea to prepare the Swissknife Perl library.
poa/  4488  3 years  plessy  Centralised informations in ‘debian/upstream-metadata.yaml’.
sigma-align/  4492  3 years  plessy  Centralised informations in ‘debian/upstream-metadata.yaml’.
rnahybrid/  4496  3 years  plessy  Centralised informations in ‘debian/upstream-metadata.yaml’.
melting/  4498  3 years  plessy  Updated and added informations.
mipe/  4499  3 years  plessy  Centralised informations in ‘debian/upstream-metadata.yaml’.
glam2/  4501  3 years  plessy  Centralised informations in ‘debian/upstream-metadata.yaml’.
mustang/  4504  3 years  plessy  Centralised informations in ‘debian/upstream-metadata.yaml’.
exonerate/  4508  3 years  plessy  Syntax corrections.
proda/  4514  3 years  plessy  Corrected syntax error.
infernal/  4524  3 years  plessy  Corrected syntax error.
phylowin/  4526  3 years  plessy  Closing ITP #395840: Phylo_win is superseded by SeaView 4.
praat/  4565  3 years  tille  Fixed git URL
tigr-glimmer/  4570  3 years  tille  Tagged 3.02-2
invesalius/  4637  3 years  tatiana_alchueyr-guest  Enhaced license / authors / copyright descritions for InVesalius
swarm/  4752  3 years  schristley-guest  set mergeWithUpstream property
sibsim4/  4756  3 years  tille  Tagged 0.20-1
libbio-mage-utils-perl/  4845  3 years  plessy  [svn-buildpackage] Tagging libbio-mage-utils-perl (20030502.0-1)
libbio-mage-perl/  4846  3 years  plessy  [svn-buildpackage] Tagging libbio-mage-perl (20030502.3-2)
biojava/  5003  2 years  heuermh-guest  adding format file
samtools/  5040  2 years  plessy  DISCONTINUED, see ‘http://git.debian.org/?p=debian-med/samtools.git’ instead…
libgenome/  5049  2 years  tille  Leave only the last two tags
emboss/  5055  2 years  plessy  Cleaned the Subversion repository after transfer of EMBOSS.
staden-io-lib/  5067  2 years  plessy  [svn-buildpackage] Tagging staden-io-lib 1.12.4-1
minc/  5136  2 years  smr  [svn-buildpackage] Tagging minc 2.1.00-1
libgo-perl/  5195  2 years  plessy  [svn-buildpackage] Tagging libgo-perl 0.13-1
sequenceconverter.app/  5303  2 years  plessy  Rejected from NEW (http://lists.alioth.debian.org/pipermail/debian-med-packaging
hmmer/  5411  2 years  moeller  Previously forgotten nicification on hmmer3
primer3/  5452  2 years  tille  Tagged 2.2.3-1
pal2nal/  5471  2 years  moeller  Waiting for an OK from upstream prior to upload.
biococoa/  5504  2 years  tille  Tagged 2.2.2-1; removed some older tags
bioruby/  5506  2 years  tille  Tagged 1.4.1-1
freeicd/  5522  2 years  ericmaeker-guest  Some test for rpath management
ncbi-tools-cxx/  5525  2 years  moeller  Seed of a package for the ncbi C++ toolkit
mencal/  5538  2 years  tille  Fix lintian problems
ctapimkt/  5587  2 years  tille  Move NMU under SVN control
insightapplications/  5635  2 years  smr  
paml/  5638  2 years  plessy  Corrected watch file and repository URLs.
fastlink/  5662  2 years  tille  Tagged 4.1P-fix95-2
dialign-t/  5666  2 years  tille  Tagged 1.0.2-2
med-doc/  5674  2 years  tille  Added paper which is now in same SVN and does not need to be fetched via svn:ext…
biofox/  5683  2 years  tille  Tagged 1.6-1
bwa/  5684  2 years  plessy  Switched to git.
clustalw/  5689  2 years  plessy  Use http://git.debian.org/?p=debian-med/clustalw.git
coils/  5691  2 years  tille  Tagged 2002-2
mcl/  5703  2 years  tille  Tagged 10-201-21
gff2aplot/  5705  2 years  tille  Tagged 2.0-6
theseus/  5715  2 years  tille  Tagged 1.6.1-1
meme/  5729  2 years  tille  Adapted the (orphaned) packaging stuff to latest meme version, I started from th…
abyss/  5739  2 years  moeller  Packaging with William of Abyss. The license does not allow a redistribution of …
blat/  5800  2 years  plessy  Found a slightly more recent version on my hard drive…
bowtie/  5859  2 years  tille  Do not give a pointer to non existing info pages in manpages
mosaik-aligner/  5874  2 years  tille  Proper copyright file, create manpages via help2man, dynamic instead of static l…
tm-align/  5922  2 years  tille  Enhances t-coffee
libjam-java/  5957  2 years  tille  Add ITP bug number
libjebl2-java/  5961  2 years  tille  Inject libjebl2-java
libtecla/  6005  2 years  schristley-guest  patch to clean up lintian warning
prottest/  6013  2 years  tille  Inject some packaging code for prottest - does not build a working package!
patristic/  6024  2 years  tille  Added e-mail address of authors as contact
zodiac-zeden/  6037  2 years  malex-guest  fixed extended description's lenght .
elastix/  6045  2 years  smr  [svn-buildpackage] Tagging elastix 4.4-2
ncbi-epcr/  6058  2 years  tille  Tagged 2.3.12-2
njplot/  6060  2 years  tille  Tagged 2.3.-3
altree/  6064  2 years  tille  Remark about new upstream release restored
libg2/  6073  2 years  tille  Tagged 0.72-2
perlprimer/  6102  2 years  plessy   # Repository migrated to Git.
clustalx/  6103  2 years  plessy   # Migrated package to Git. git://git.debian.org/debian-med/clustalx.git
transtermhp/  6133  2 years  malex-guest  fixed upstream maintaner's name in copyright
rdp-classifier/  6150  2 years  moeller  Package looks good, needs some more love. It is one of those packages that may h…
fasttree/  6155  2 years  tille  Short description, group maintenance
wgs-assembler/  6158  2 years  moeller  Now it also works with svn-buildpackage
vmd/  6164  2 years  moeller  Works.
resmed-doc/  6179  2 years  tille  Update control file information to fit recent standards
activiz.net/  6212  2 years  malat-guest  Final pass for activiz+mummy
log4qt/  6216  2 years  malat-guest  final polishing of log4qt
ball/  6223  2 years  moeller  Added a pleithora of warnings about the git repository that now hosts the Debian…
mummy/  6233  2 years  plessy  Polished DEP-5 format of debian/copyright.
pythonqt/  6238  2 years  domibel  Use LGPL-2.1 instead of LGPL-2+
seq-gen/  6253  2 years  tille  Tagged 1.3.2-1
maq/  6257  2 years  plessy  [svn-buildpackage] Tagging maq 0.7.1-4
dialign/  6261  2 years  tille  Tagged 2.2.1-5
maqview/  6274  2 years  tille  Tagged 0.2.5-1
libbio-graphics-perl/  6372  2 years  plessy  Package moved to Git. http://git.debian.org/?p=debian-med/libbio-graphics-perl.…
amide/  6386  2 years  tille  Tagged 0.9.3-1
mayam/  6387  2 years  tille  Sort out what JARs are in Debian, unfortunately there is a fair amount of not ye…
maude/  6501  2 years  tille  Follow hint of ftpmaster to fix clean target and clean up src/Mixfix/surface.out…
python-biopython/  6515  2 years  philipp  [svn-buildpackage] Tagging python-biopython 1.57-1
figtree/  6551  2 years  tille  Tagged 1.3.1-1
microbiomeutil/  6555  2 years  tbooth-guest  I reckon I'm 90% there with this. The package now splits into separate tools an…
medical/  6579  2 years  tille  Clean up some lintian warnings
aeskulap/  6605  2 years  malat-guest  [svn-buildpackage] Tagging aeskulap 0.2.2b1-8
shim/  6606  2 years  tille  Inject Jeff Buchbinders work on shim package including my changes
beast-mcmc/  6607  2 years  tille  Fixed Build Depends
squizz/  6611  2 years  osallou-guest  add tags
mothur/  6651  2 years  tille  Tagged 1.18.1-1
charls/  6692  2 years  tille  Fixed comment
axparafit/  6720  2 years  tille  Waiting for confirmation of GPL from upstream
freediams/  6727  2 years  ericmaeker-guest  FreeDiams: updating description
amap-align/  6746  2 years  tille  I always forget to upgrad the source format for this one ...
probcons/  6749  2 years  tille  Tagged 1.12-8
probalign/  6766  2 years  tille  Tagged 1.4-2
denoiser/  6768  2 years  tille  Tagged 0.9.1-1
igstk/  6801  2 years  domibel-guest   * new upstream release * debian/rules remove redundant "--no-add-needed" opt…
embassy-domainatrix/  6809  2 years  plessy  [svn-buildpackage] Tagging embassy-domainatrix 0.1.0+20100721-3
embassy-domsearch/  6821  2 years  plessy  [svn-buildpackage] Tagging embassy-domsearch 0.1.0++20100721-3
embassy-domalign/  6823  2 years  plessy  [svn-buildpackage] Tagging embassy-domalign 0.1.0+20100721-3
autodock-vina/  6827  2 years  moeller  Uploaded version 1.1.2 of autodock-vina
embassy-phylip/  6829  2 years  plessy  [svn-buildpackage] Tagging embassy-phylip 3.69+20100721-3
prank/  6849  2 years  manuel  Moved package to non-free The package contains code copies from PAML which has …
plink/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
mummer/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
care2x/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
bioimagesuite/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
treetool/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
readseq/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
boxshade/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
pvrg-jpeg/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
igraph/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
mlstdbnet/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
gentle/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
alien-hunter/  6865  2 years  malat-guest  Make sure GZIP has option --best and --no-name
openmrs/  6866  2 years  malat-guest  Make sure GZIP has option --best and --no-name
muscle/  6898  2 years  plessy  New upstream release that may need to be repacked.
smile/  6903  2 years  tille  Tagged 1.47-1
cinema/  6935  2 years  tille  Fixed watch file, removed useless comments in rules, team maintenance in control…
dotur/  6942  2 years  tille  Added current e-mail address of upstream author
snap/  7064  2 years  tille  Group maintenance
bioperl/  7070  2 years  plessy  [svn-buildpackage] Tagging bioperl 1.6.901-1
bioperl-run/  7088  2 years  plessy  [svn-buildpackage] Tagging bioperl-run 1.6.9-1
t-coffee/  7110  23 months  plessy  [svn-buildpackage] Tagging t-coffee 8.99-1
freemedforms/  7111  23 months  ericmaeker-guest  correction of dependencies (build failed: missing zlib)
mriconvert/  7134  23 months  smr  [svn-buildpackage] Tagging mriconvert 2.0.216-1
treeviewx/  7146  23 months  plessy  [svn-buildpackage] Tagging treeviewx 0.5.1+20100823-1
kalign/  7155  23 months  plessy  [svn-buildpackage] Tagging kalign 1:2.03+20110620-1
phyml/  7168  23 months  plessy  [svn-buildpackage] Tagging phyml 2:20110526-1
adun.app/  7174  23 months  tille  Source version 3.0 (quilt) - at least I can not see a reason why not ...
mrbayes/  7180  23 months  tille  Tagged 3.1.2-2
last-align/  7184  23 months  plessy  [svn-buildpackage] Tagging last-align 178-1
raxml/  7200  23 months  tille  Tagged 7.2.8-1
clonalframe/  7206  23 months  tille  Tagged 1.2-2
dicomscope/  7215  23 months  tille  Source format 3.0 (quilt)
raccoon/  7220  23 months  tille  Group maintenance, fixed VCS tags
R/  7224  23 months  tille  Tagged 2.12.2.3-1, removed historical tags
toothchart/  7226  23 months  alteholz-guest  first version of this package
qtlreaper/  7229  23 months  tille  Substvars should not be commited to SVN
vienna-rna/  7272  23 months  malex-guest  fixed few linitin's pedantic complains .
libace-perl/  7276  23 months  tille  Made some copyright files which are claiming DEP5 compatibility save to pass …
bagphenotype/  7276  23 months  tille  Made some copyright files which are claiming DEP5 compatibility save to pass …
abacas/  7276  23 months  tille  Made some copyright files which are claiming DEP5 compatibility save to pass …
gamgi/  7276  23 months  tille  Made some copyright files which are claiming DEP5 compatibility save to pass …
ensembl/  7277  23 months  moeller  Uploaded version 63 to experimental and Debian Med PPA
uw-prism/  7286  23 months  tille  Team maintenance fields
jbrowse/  7294  23 months  tille  Description copied from tasks file
raster3d/  7297  23 months  naoliv  Better ifs
acedb/  7300  23 months  tille  Tagged 4.9.39+dfsg.01-3
imagej/  7308  23 months  tille  Tagged 1.45k-1, removed historical tags
arb/  7314  22 months  naoliv  We need only the ssh client (that is provided by openssh-client) and not a full …
seaview/  7329  22 months  plessy  [svn-buildpackage] Tagging seaview 1:4.3.0-1
vcftools/  7353  22 months  moeller  Series of further changes.
rosetta/  7363  22 months  moeller  Update for Rosetta 3.3
murasaki/  7364  22 months  tille  some packaging updates, not tested yet
dicompyler/  7373  22 months  tille  Tagged just uploaded new package dicompyler
fis-gtm/  7394  22 months  alteholz-guest  added alternatives, changed default user to root
mgltools/  7397  22 months  tille  Tagged 1.5.6~rc1+cvs.20110809-1
gwyddion/  7398  22 months  beathovn-guest  New Debian release with added patch against build problem on big endian architec…
anfo/  7426  22 months  tille  Team maintenance
velvet/  7435  22 months  plessy  Validated and reformatted with ‘config-edit -application dpkg-copyright’.
circos/  7449  22 months  plessy  [svn-buildpackage] Tagging circos 0.55-1
circos-tools/  7453  22 months  plessy  [svn-buildpackage] Tagging circos-tools 0.16-1
ssake/  7461  22 months  plessy  [svn-buildpackage] Tagging ssake 3.8-1
cdbfasta/  7470  22 months  tbooth-guest  Added a get-orig-source script to pull the upstream and set the version based on…
sofa-framework/  7474  22 months  naoliv  Fix path for /usr/include/qwt/qwt_plot.h
pixelmed/  7502  22 months  malat-guest  [svn-buildpackage] Tagging pixelmed 20110717-1
biomaj/  7512  21 months  osallou-guest  update standards version
biomaj-watcher/  7514  21 months  osallou-guest  set unstable release
ampliconnoise/  7516  21 months  moeller  Sponsored Tim's update for unstable. Took me of the uploaders list.
libtfbs-perl/  7544  21 months  plessy  [svn-buildpackage] Tagging libtfbs-perl 0.5.svn.20100421-1
python-pynast/  7557  21 months  moeller  Tim pointed me to an oversight of mine. The license of python-cogent is indeed f…
mafft/  7563  21 months  plessy  [svn-buildpackage] Tagging mafft 6.859-1
dcmtk/  7564  21 months  malat-guest  [svn-buildpackage] Tagging dcmtk 3.6.0-8
ncbi-blast+/  7584  21 months  ucko  [svn-buildpackage] Tagging ncbi-blast+ 2.2.25-5
qiime/  7588  21 months  tille  DM-Upload-Allowed: yes
edfbrowser/  7592  21 months  tille  Tagged 1.38-1
pdb2pqr/  7599  21 months  manuel  [svn-buildpackage] Tagging pdb2pqr 1.7-2
rostlab/  7602  21 months  moeller  Fixed usual debian/rules binary-arch problem.
epigrass/  7629  21 months  tille  Reverted previous change according to Charles hint (thanks)
mira/  7632  21 months  moeller  Got Tim's changes into Debian. Thanks!!
vxl/  7642  21 months  malat-guest  prepare vxl
dicom3tools/  7645  21 months  malat-guest  [svn-buildpackage] Tagging dicom3tools 1.0~20110901-1
python-cogent/  7653  21 months  moeller  Updated to 1.5.1-2
ctk/  7658  21 months  malat-guest  one more lintian fix
vtkedge/  7660  21 months  malat-guest  Another attempt in building vtkedge with paraview 3.10
autodocksuite/  7663  21 months  moeller  Reverted name change of upstream-metadata.yaml.
netepi-collection/  7677  21 months  alteholz-guest  typo corrected
dcm4che/  7678  21 months  alteholz-guest  typo corrected
volview/  7684  21 months  malat-guest  Fix for viewvc
openslide/  7690  21 months  malat-guest  Improve documentation
gdcm/  7703  21 months  malat-guest  [svn-buildpackage] Tagging gdcm 2.0.18-4
gofigure2/  7711  21 months  malat-guest  Merge patch from upstream (Arnaud Gelas + fedora team)
ginkgocadx/  7713  21 months  tille  Tagged 2.5.4.0~rc-1
gnumed-server/  7715  21 months  tille  Tagged 15.10-1
gnumed-client/  7717  21 months  tille  Tagged 0.9.10-2
plastimatch/  7733  21 months  domibel  tagging plastimatch-1.5.3.dfsg0-1
seqan/  7736  21 months  plessy  Investigating the diff between 1.2 and 1.3; found a convenience copy of SAMtools…
gmod/  7743  21 months  osallou-guest  add patches for install, move conf to /etc
mobyle/  7746  21 months  osallou-guest  remove SKIP operation, unneeded
jai-core/  7758  21 months  malat-guest  remaning lintian error
jai-imageio-core/  7760  21 months  malat-guest  two convention used in lintian...
insighttoolkit/  7761  21 months  smr  [svn-buildpackage] Tagging insighttoolkit 3.20.0-15
bio-formats/  7765  21 months  malat-guest  redo patch
netcdf-java/  7768  21 months  malat-guest  fix patch + tweaks
visad/  7772  21 months  malat-guest  Fix control & copyright

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