Log of /trunk/community/infrastructure

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Revision 2251 - Directory Listing
Modified Thu Jul 17 16:21:54 2008 UTC (4 years, 10 months ago) by smoe-guest

* added --remove

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Revision 2247 - Directory Listing
Modified Thu Jul 17 01:12:33 2008 UTC (4 years, 10 months ago) by plessy

Another way to get Jasper.

This downloads the zip files in
http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/. They can be indexed by the
`jaspextract' tool of EMBOSS 6.

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Revision 2204 - Directory Listing
Modified Tue Jul 8 16:05:42 2008 UTC (4 years, 10 months ago) by smoe-guest

* getData can now read its configuration from separate files.

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Revision 2195 - Directory Listing
Modified Tue Jul 8 10:34:12 2008 UTC (4 years, 10 months ago) by smoe-guest

Added Pfam A,B,C, no unpacking yet, though.

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Revision 2156 - Directory Listing
Modified Sun Jul 6 06:44:43 2008 UTC (4 years, 10 months ago) by tille

Deactivate this script and issue a warning about this.  I'm not able to uninstall Davids corn job by other means.  (David, sorry for the noise this might cause in your mail box via cron while you are offline - but I see no other chance ...)

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Revision 2138 - Directory Listing
Modified Fri Jul 4 14:27:40 2008 UTC (4 years, 10 months ago) by smoe-guest

Fix of config display.

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Revision 2131 - Directory Listing
Modified Thu Jul 3 22:56:29 2008 UTC (4 years, 10 months ago) by smoe-guest

SWISS-PROT works.

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Revision 2130 - Directory Listing
Modified Thu Jul 3 13:49:11 2008 UTC (4 years, 10 months ago) by smoe-guest

Automated indexing should work for TrEMBL now.

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Revision 2129 - Directory Listing
Modified Thu Jul 3 12:34:40 2008 UTC (4 years, 10 months ago) by smoe-guest

Working towards an automated indexing for Emboss.

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Revision 2109 - Directory Listing
Modified Mon Jun 30 13:48:22 2008 UTC (4 years, 10 months ago) by smoe-guest

Added TrEMBL (protein sequence data maintained at the European Bioinformatics Institute)
to the list of available databases.

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Revision 1988 - Directory Listing
Modified Fri Jun 6 09:46:45 2008 UTC (4 years, 11 months ago) by tille

Finally enable Homepage and homepage (lower case) as key to get rid of useless warnings.

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Revision 1982 - Directory Listing
Modified Fri Jun 6 09:16:22 2008 UTC (4 years, 11 months ago) by hanska-guest

Yes, I'm sleeping.

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Revision 1981 - Directory Listing
Modified Fri Jun 6 09:15:36 2008 UTC (4 years, 11 months ago) by hanska-guest

Forgot to also update the Tasks index...

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Revision 1980 - Directory Listing
Modified Fri Jun 6 09:11:41 2008 UTC (4 years, 11 months ago) by hanska-guest

Improving "generalization" for other CDDs. Test will follow.

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Revision 1978 - Directory Listing
Modified Fri Jun 6 07:00:34 2008 UTC (4 years, 11 months ago) by tille

Get rid of all fixed Debian-Med strings in the template to make it usable for other CDDs.  Note: This breaks current i18n strings but the request from others was strong enough to go for this quick and dirty solution.  I'm lacking the skill to correctly wrap Template and PHP i18n.  The rewrite of the task generating pages with better i18n is in progress...

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Revision 1968 - Directory Listing
Modified Wed Jun 4 14:39:41 2008 UTC (4 years, 11 months ago) by tille

Add Debian Junior

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Revision 1917 - Directory Listing
Modified Sun May 25 22:26:52 2008 UTC (4 years, 11 months ago) by smoe-guest

Nicified changelogs.

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Revision 1835 - Directory Listing
Modified Thu May 8 08:41:05 2008 UTC (5 years ago) by tille

Don't fail if a new task package appears.

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Revision 1678 - Directory Listing
Modified Fri Apr 4 14:18:55 2008 UTC (5 years, 1 month ago) by tille

Enable other users to update the web pages

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Revision 1676 - Directory Listing
Modified Tue Apr 1 09:30:08 2008 UTC (5 years, 1 month ago) by tille

Fix Data dir for other CDDs than Debian-Med

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Revision 1675 - Directory Listing
Modified Mon Mar 31 15:17:41 2008 UTC (5 years, 1 month ago) by tille

Do not query SVN more than necessary; Handle 'Ignore' / 'Avoids' keys of Debian-Edu reasonably; Handle non-RFC822 conform '\'-ending lines correctly

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Revision 1669 - Directory Listing
Modified Sun Mar 30 07:58:07 2008 UTC (5 years, 1 month ago) by tille

Enable building of tasks pages for other CDDs in proper directories.

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Revision 1660 - Directory Listing
Modified Tue Mar 25 09:42:06 2008 UTC (5 years, 1 month ago) by tille

David, if I can really access your crontab file this way to reduce your amount of SPAM by cron jobs, I'm happy to do so.  BTW, where is the script that forewards this content of SVN to the script directory?

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Revision 1659 - Directory Listing
Modified Tue Mar 25 09:23:07 2008 UTC (5 years, 1 month ago) by tille

Do not try to chmod other people's files

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Revision 1658 - Directory Listing
Modified Tue Mar 25 07:30:25 2008 UTC (5 years, 1 month ago) by tille

Leave gzip as default on Alioth because this sounds more reasonable here

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Revision 1657 - Directory Listing
Modified Mon Mar 24 22:15:53 2008 UTC (5 years, 1 month ago) by tille

Make sure that created files have 664 permission in any case

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Revision 1640 - Directory Listing
Modified Thu Mar 20 07:03:44 2008 UTC (5 years, 1 month ago) by tille

Accept ';' as valid character in URLs (which is used at mentors to separate package names)

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Revision 1616 - Directory Listing
Modified Mon Mar 17 22:17:29 2008 UTC (5 years, 2 months ago) by tille

Enabled comment fields starting with ^X[A-Z]*- (that do not issue a warning)
Preparation to parse DDTP translation - Interface might change!!!

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Revision 1615 - Directory Listing
Modified Mon Mar 17 19:04:42 2008 UTC (5 years, 2 months ago) by tille

List only packages from main at DDTP page because non-free and contrib
do not have translations anyway.

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Revision 1596 - Directory Listing
Modified Sat Mar 15 06:52:09 2008 UTC (5 years, 2 months ago) by tille

Enable parsing bz2 files to save some time behind slow connections.

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Revision 1581 - Directory Listing
Modified Fri Mar 14 07:07:58 2008 UTC (5 years, 2 months ago) by tille

Add WNPP bug number to unofficial packages

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Revision 1549 - Directory Listing
Modified Mon Mar 10 13:46:21 2008 UTC (5 years, 2 months ago) by tille

Fix Responsible address handling

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Revision 1546 - Directory Listing
Modified Mon Mar 10 13:13:45 2008 UTC (5 years, 2 months ago) by tille

Turn responsible Tag into Mail address.  Remaining problem to fix: There is only
one single prospective package that lists a responsible person, but much more should.

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Revision 1539 - Directory Listing
Modified Sat Mar 8 07:39:59 2008 UTC (5 years, 2 months ago) by tille

Bring update-ddtp using cddtasktool.py into operation to not list prospective
packages in the DDTP list.  David, make sure you use the wrapper in the cron
script to avoid mails from cron

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Revision 1538 - Directory Listing
Modified Sat Mar 8 07:31:57 2008 UTC (5 years, 2 months ago) by tille

Use a wrapper for update-ddtp because the script might issue some warnings and takes the actuall CDD as argument.

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Revision 1524 - Directory Listing
Modified Thu Mar 6 10:37:57 2008 UTC (5 years, 2 months ago) by tille

New URLs for DDTP

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Revision 1523 - Directory Listing
Modified Thu Mar 6 09:00:14 2008 UTC (5 years, 2 months ago) by tille

DDTP needs a sorted list of all dependant packages of the CDD

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Revision 1511 - Directory Listing
Modified Tue Mar 4 22:30:58 2008 UTC (5 years, 2 months ago) by tille

Caching of packages files, escaping '&' in short description

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Revision 1509 - Directory Listing
Modified Tue Mar 4 10:17:14 2008 UTC (5 years, 2 months ago) by tille

Some keys in current debian-edu tasks are not yet needed for the web page and so they are ignored.

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Revision 1505 - Directory Listing
Modified Mon Mar 3 19:10:07 2008 UTC (5 years, 2 months ago) by tille

inofficial -> unofficial

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Revision 1502 - Directory Listing
Modified Mon Mar 3 09:38:37 2008 UTC (5 years, 2 months ago) by tille

Unofficial -> Experimental or inofficial

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Revision 1492 - Directory Listing
Modified Sat Mar 1 14:09:12 2008 UTC (5 years, 2 months ago) by tille

THe '&' is actually %26 and not %3F ...

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Revision 1490 - Directory Listing
Modified Sat Mar 1 12:12:36 2008 UTC (5 years, 2 months ago) by tille

The first measure to prevent '&' in URLs was enough - it was just a caching problem that imaging page did not work

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Revision 1489 - Directory Listing
Modified Sat Mar 1 10:02:52 2008 UTC (5 years, 2 months ago) by tille

Another try for a fix

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Revision 1488 - Directory Listing
Modified Sat Mar 1 09:54:00 2008 UTC (5 years, 2 months ago) by tille

Fix the '&' problem (Thanks to Michael Bramer)

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Revision 1486 - Directory Listing
Modified Fri Feb 29 23:47:57 2008 UTC (5 years, 2 months ago) by tille

Added svn location of Debian-GIS tasks

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Revision 1478 - Directory Listing
Modified Wed Feb 27 14:55:14 2008 UTC (5 years, 2 months ago) by smoe-guest

Added gene ontology, verbose option and Charles as co-author.

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Revision 1470 - Directory Listing
Modified Tue Feb 26 08:06:06 2008 UTC (5 years, 2 months ago) by charles-guest

Makes a buildable Debian package

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Revision 1457 - Directory Listing
Modified Wed Feb 20 21:14:58 2008 UTC (5 years, 2 months ago) by tille

Use relative paths from tasks/index.php to the task sections to work
nicely in Debian-Science which resides in a subdirectory of CDD.

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Revision 1456 - Directory Listing
Modified Wed Feb 20 20:11:13 2008 UTC (5 years, 2 months ago) by hanska-guest

Fixing bug. Thanks Nelson!

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Revision 1452 - Directory Listing
Modified Tue Feb 19 17:26:58 2008 UTC (5 years, 2 months ago) by tille

Prevent HTMLTemplate.py to Encode our strings - we just do this ourselves.
HTMLTemplate.py is buggy and ignores own {De,En}coders.  I gave up to provide
a real fix but just changed the default encoder to do nothing.

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Revision 1443 - Directory Listing
Modified Mon Feb 18 19:57:26 2008 UTC (5 years, 2 months ago) by tille

Provide info about maintainer in "responsible" field

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Revision 1438 - Directory Listing
Modified Mon Feb 18 17:12:56 2008 UTC (5 years, 2 months ago) by tille

Make sure pre-wrapped spaces will not be removed by strip()

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Revision 1436 - Directory Listing
Modified Mon Feb 18 16:08:11 2008 UTC (5 years, 2 months ago) by tille

Regard CDD as command line argument

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Revision 1435 - Directory Listing
Modified Mon Feb 18 16:03:20 2008 UTC (5 years, 2 months ago) by tille

Use <pre> tag if a line is indented with at least two spaces

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Revision 1432 - Directory Listing
Modified Mon Feb 18 10:56:14 2008 UTC (5 years, 3 months ago) by smoe-guest

Added KEGG in XML format.

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Revision 1421 - Directory Listing
Modified Mon Feb 18 10:14:20 2008 UTC (5 years, 3 months ago) by hanska-guest

Now using "root" styles (i.e. /inc/style.css)

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Revision 1419 - Directory Listing
Modified Mon Feb 18 09:59:40 2008 UTC (5 years, 3 months ago) by hanska-guest

Border 1px black?!

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Revision 1418 - Directory Listing
Modified Mon Feb 18 09:58:42 2008 UTC (5 years, 3 months ago) by hanska-guest

Uhm. Right, this ain't PHP.

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Revision 1417 - Directory Listing
Modified Mon Feb 18 09:57:04 2008 UTC (5 years, 3 months ago) by hanska-guest

Adding new template -- hope it works.

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Revision 1416 - Directory Listing
Modified Mon Feb 18 09:45:35 2008 UTC (5 years, 3 months ago) by hanska-guest

Test

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Revision 1399 - Directory Listing
Modified Sun Feb 17 07:36:40 2008 UTC (5 years, 3 months ago) by tille

Putting the new version of update_tasks into operation.

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Revision 1390 - Directory Listing
Modified Fri Feb 15 23:19:46 2008 UTC (5 years, 3 months ago) by tille

Do not print section headings if there is no content

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Revision 1389 - Directory Listing
Modified Fri Feb 15 22:57:02 2008 UTC (5 years, 3 months ago) by tille

License information for official packages

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Revision 1388 - Directory Listing
Modified Fri Feb 15 22:24:39 2008 UTC (5 years, 3 months ago) by tille

Enable ~ in URLs and mark ftp: strings asl links as well

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Revision 1387 - Directory Listing
Modified Fri Feb 15 22:09:18 2008 UTC (5 years, 3 months ago) by tille

Enable '?' and '=' in URLs

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Revision 1383 - Directory Listing
Modified Fri Feb 15 21:16:38 2008 UTC (5 years, 3 months ago) by tille

Turn http://... strings into links

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Revision 1382 - Directory Listing
Modified Fri Feb 15 20:14:16 2008 UTC (5 years, 3 months ago) by tille

Handle paragraph separators

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Revision 1380 - Directory Listing
Modified Fri Feb 15 15:37:29 2008 UTC (5 years, 3 months ago) by tille

'&' has to be excaped in HTML

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Revision 1378 - Directory Listing
Modified Thu Feb 14 21:12:45 2008 UTC (5 years, 3 months ago) by tille

Please check this - it should work now.  Some minor enhancements (command
line options for other CDDs, etc.) can follow later.

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Revision 1377 - Directory Listing
Modified Thu Feb 14 17:22:07 2008 UTC (5 years, 3 months ago) by tille

Remaining Problem: formerly existing packages in Debian which now are not available any more.  Solution will be: Leave them out (example: libminc0-dev causes HTML_Template to crash)

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Revision 1359 - Directory Listing
Modified Mon Feb 11 19:34:10 2008 UTC (5 years, 3 months ago) by tille

Missing blank where line breaks used to be

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Revision 1358 - Directory Listing
Modified Mon Feb 11 19:32:15 2008 UTC (5 years, 3 months ago) by tille

Issue with repeated descriptions solve, reason was strong requirement of lists for all HTML_Template stuff; solution was to provide "list of indizees" to reference our list of DependantPackage structures in the render* routines;  NEEDS FIX: Finally there is some error in reder function.

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Revision 1356 - Directory Listing
Modified Mon Feb 11 10:16:58 2008 UTC (5 years, 3 months ago) by hanska-guest

Add some more replace()s :)

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Revision 1355 - Directory Listing
Modified Mon Feb 11 10:10:43 2008 UTC (5 years, 3 months ago) by hanska-guest

Sanitize output for XHTML web pages.

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Revision 1354 - Directory Listing
Modified Mon Feb 11 10:07:13 2008 UTC (5 years, 3 months ago) by hanska-guest

Fixed some typos in error messages.

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Revision 1353 - Directory Listing
Modified Mon Feb 11 09:58:47 2008 UTC (5 years, 3 months ago) by smoe-guest

Some bits towards a package for data management.

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Revision 1349 - Directory Listing
Modified Sun Feb 10 20:00:32 2008 UTC (5 years, 3 months ago) by tille

eems quite similar to Davids work now

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Revision 1348 - Directory Listing
Modified Sun Feb 10 07:09:17 2008 UTC (5 years, 3 months ago) by tille

Package URLs

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Revision 1347 - Directory Listing
Modified Sat Feb 9 20:37:43 2008 UTC (5 years, 3 months ago) by tille

Output looks similar to Davids, Links to packages are missing yet

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Revision 1346 - Directory Listing
Modified Sat Feb 9 18:36:10 2008 UTC (5 years, 3 months ago) by tille

First time with any output - has to be compared to Davids version

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Revision 1345 - Directory Listing
Modified Sat Feb 9 18:06:43 2008 UTC (5 years, 3 months ago) by tille

More fixes (not yet complete)

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Revision 1341 - Directory Listing
Modified Fri Feb 8 22:50:05 2008 UTC (5 years, 3 months ago) by tille

Store homepage and version of available packages

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Revision 1340 - Directory Listing
Modified Fri Feb 8 22:01:52 2008 UTC (5 years, 3 months ago) by tille

More fixes (not working yet)

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Revision 1338 - Directory Listing
Modified Thu Feb 7 19:52:39 2008 UTC (5 years, 3 months ago) by tille

Some fixes, not working yet

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Revision 1334 - Directory Listing
Modified Wed Feb 6 19:47:45 2008 UTC (5 years, 3 months ago) by tille

Try to reimplement update-tasks with possibly less changes (not working yet)

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Revision 1290 - Directory Listing
Modified Tue Feb 5 21:39:21 2008 UTC (5 years, 3 months ago) by tille

Bugfixes and many documentation enhancements

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Revision 1289 - Directory Listing
Modified Tue Feb 5 16:15:41 2008 UTC (5 years, 3 months ago) by smoe-guest

Works!  Added KEGG and IntACT. Reads /etc/default/getData.

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Revision 1288 - Directory Listing
Modified Mon Feb 4 13:04:05 2008 UTC (5 years, 3 months ago) by hanska-guest

Redirecting stdout to /dev/null and stderr to stdout.
(my mailbox has been filled by useless stdout messages :)

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Revision 1283 - Directory Listing
Modified Sun Feb 3 16:48:27 2008 UTC (5 years, 3 months ago) by hanska-guest

Changing output file -- it was deleted by any other commit
on the website.

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Revision 1281 - Directory Listing
Modified Sun Feb 3 16:45:09 2008 UTC (5 years, 3 months ago) by hanska-guest

Fixing make-policy: wrong XSL and redirecting errors to /dev/null

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Revision 1278 - Directory Listing
Modified Sun Feb 3 16:39:11 2008 UTC (5 years, 3 months ago) by hanska-guest

Support for the docbook thing :)

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Revision 1276 - Directory Listing
Modified Sun Feb 3 12:36:46 2008 UTC (5 years, 3 months ago) by tille

Fixed reading list of _all_ tasks

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Revision 1275 - Directory Listing
Modified Sun Feb 3 12:12:56 2008 UTC (5 years, 3 months ago) by tille

Implement sorted list of dependencies

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Revision 1274 - Directory Listing
Modified Sun Feb 3 09:54:11 2008 UTC (5 years, 3 months ago) by tille

Store description of Debian package together with dependency

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Revision 1272 - Directory Listing
Modified Sat Feb 2 23:49:25 2008 UTC (5 years, 3 months ago) by tille

testscript starts to produce reasonable results

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Revision 1271 - Directory Listing
Modified Sat Feb 2 22:38:38 2008 UTC (5 years, 3 months ago) by tille

Further alpha quality commit, several fixes, other bugs remain

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Revision 1266 - Directory Listing
Modified Sat Feb 2 18:35:52 2008 UTC (5 years, 3 months ago) by tille

Several fixes (needs further checking)

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Revision 1263 - Directory Listing
Modified Sat Feb 2 17:23:00 2008 UTC (5 years, 3 months ago) by tille

Just another snapshot (not yet working)

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Revision 1262 - Directory Listing
Modified Sat Feb 2 15:14:48 2008 UTC (5 years, 3 months ago) by tille

Defined some classes that help reading our tasks files and Packages / Sources files (not finished yet!)

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Revision 1260 - Directory Listing
Modified Sat Feb 2 12:19:10 2008 UTC (5 years, 3 months ago) by hanska-guest

Again, test commit

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Revision 1259 - Directory Listing
Modified Sat Feb 2 12:17:22 2008 UTC (5 years, 3 months ago) by hanska-guest

In fact, I actually broke everything.
Test commit (post-commit hook fixed I hope)

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Revision 1258 - Directory Listing
Modified Sat Feb 2 12:12:23 2008 UTC (5 years, 3 months ago) by hanska-guest

Putting scripts under SVN, let's hope it works
(post-commit hook already edited :)

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Revision 1257 - Directory Listing
Modified Sat Feb 2 11:03:47 2008 UTC (5 years, 3 months ago) by tille

This is another test how we should read our tasks files using python-apt to make sure everything is processed nicely.

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Revision 1256 - Directory Listing
Modified Fri Feb 1 18:28:02 2008 UTC (5 years, 3 months ago) by tille

Simple test of python-debian whether it might whether it might be more usefull for update-tasks regarding specifying the target distribution.

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Revision 1156 - Directory Listing
Modified Thu Jan 17 23:03:51 2008 UTC (5 years, 4 months ago) by smoe-guest

Concept study for a mirroring system that could possibly be shared between multiple applications. Comments welcome. Have a look at the source and try

	getData.pl --list

or

	getData.pl --man

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Revision 1047 - Directory Listing
Modified Sun Dec 30 16:44:44 2007 UTC (5 years, 4 months ago) by hanska-guest

Importing scripts into SVN

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Revision 486 - Directory Listing
Modified Tue Oct 2 09:52:54 2007 UTC (5 years, 7 months ago) by hanska-guest

test... is just website/ which doesn't trigger the hook?

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Revision 412 - Directory Listing
Added Tue Aug 21 22:51:45 2007 UTC (5 years, 8 months ago) by smoe-guest

A script using uscan to download the latest version
of the upstream source and preparing .svn/deb-layout 
for the right paths.

In the meantime I have learned about svn-upgrade
which is badly described in its man page but sounds a bit
like being much the same intentionwise.

This script needs to wait for a new version of devscripts 
to become functional.

Steffen