| 1 |
field::biology:annotation
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| 2 |
field::biology:sequence
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| 3 |
field::biology:sequence:dna
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| 4 |
field::biology:sequence:rna
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| 5 |
field::biology:sequence:protein
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| 6 |
# I would rather move the :sequence tags to the works-with:: facet -- Charles
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| 7 |
field::biology:structural
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| 8 |
field::biology:molecular
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| 9 |
field::biology:evolution
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| 10 |
field::biology:interaction
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| 11 |
field::biology:genomics
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| 12 |
field::biology:proteomics
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| 13 |
field::biology:metabolomics
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| 14 |
field::biology:transcriptiomics
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| 15 |
field::biology:systems
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| 16 |
field::mathematics:graphs
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| 17 |
field::medicine:imaging
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| 18 |
field::medicine:practice
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| 19 |
field::medicine:odontology
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| 20 |
field::medicine:his
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| 21 |
hardware::input:dmm
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| 22 |
implemented-in::ACD # The AJAX Command Definition (ACD) languag, used by EMBOSS, has nothing to do with web 2.0
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| 23 |
suite::emboss # will also be used for the embassy pacakges
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| 24 |
use::annotation
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| 25 |
use::analysis # further depths would be redundant with the works-with:: facet
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| 26 |
use::comparison
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| 27 |
use::comparison:alignment
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| 28 |
use::comparison:phylogeny
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| 29 |
use::experiment
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| 30 |
use::experiment:molecular-biology
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| 31 |
use::measuring
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| 32 |
use::database:index # Or just use::index since there is already a works-with::db tag ?
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| 33 |
use::database:query # Or just use::query since there is already a works-with::db tag ?
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| 34 |
works-with::device
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| 35 |
works-with::sequence:desoxyribonucleic
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| 36 |
works-with::sequence:ribonucleic # or just sequence:nucleic?
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| 37 |
# I think that sequence:biolgical would be superfluous because of the field::biology tag
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| 38 |
works-with::sequence:peptidic
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| 39 |
works-with::structure # or can it be unified with works-with::3Dmodel?
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| 40 |
works-with-format::abi # Applied BIosystems. This one is not plaintext, I think.
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| 41 |
works-with-format::fitch # neither this one
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| 42 |
works-with-format::biology:fasta
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| 43 |
works-with-format::biology:aln
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| 44 |
works-with-format::biology:pdb
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| 45 |
works-with-format::biology:embl
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| 46 |
works-with-format::biology:affy:dat
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| 47 |
works-with-format::biology:affy:cel
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| 48 |
# I would rather move the above formats in the ::plaintext subfacet -- Charles
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| 49 |
# This is fine with me. And what about affy:cdf? This could go to plaintext:cdf directly? -- Steffen
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| 50 |
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| 51 |
works-with-format::plaintext:acedb
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| 52 |
works-with-format::plaintext:aln
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| 53 |
works-with-format::plaintext:asn1
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| 54 |
works-with-format::plaintext:codata
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| 55 |
works-with-format::plaintext:dbid
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| 56 |
works-with-format::plaintext:embl
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| 57 |
works-with-format::plaintext:experiment
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| 58 |
works-with-format::plaintext:fasta
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| 59 |
works-with-format::plaintext:gcg
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| 60 |
works-with-format::plaintext:gff
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| 61 |
works-with-format::plaintext:hennig86
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| 62 |
works-with-format::plaintext:ij
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| 63 |
works-with-format::plaintext:jackknifer
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| 64 |
works-with-format::plaintext:jackknifernon
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| 65 |
works-with-format::plaintext:mega
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| 66 |
works-with-format::plaintext:meganon
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| 67 |
works-with-format::plaintext:msf
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| 68 |
works-with-format::plaintext:nbrf
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| 69 |
works-with-format::plaintext:ncbi
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| 70 |
works-with-format::plaintext:nexus
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| 71 |
works-with-format::plaintext:nexusnon
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| 72 |
works-with-format::plaintext:paup
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| 73 |
works-with-format::plaintext:paupnon
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| 74 |
works-with-format::plaintext:pdb
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| 75 |
works-with-format::plaintext:pir
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| 76 |
works-with-format::plaintext:pfam
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| 77 |
works-with-format::plaintext:phylip
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| 78 |
works-with-format::plaintext:phylipnon
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| 79 |
works-with-format::plaintext:raw #OK, that one advocates against the use of plaintext.
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| 80 |
works-with-format::plaintext:selex
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| 81 |
works-with-format::plaintext:staden
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| 82 |
works-with-format::plaintext:strider
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| 83 |
works-with-format::plaintext:stockholm
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| 84 |
works-with-format::plaintext:swissprot
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| 85 |
works-with-format::plaintext:treecon
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| 86 |
works-with-format::plaintext:affy:dat
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| 87 |
works-with-format::plaintext:affy:cel
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| 88 |
works-with-format::medicine:practice:xDT
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| 89 |
works-with-format::medicine:DICOM # or works-with-format::dicom ? -- Charles
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| 90 |
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| 91 |
# an earlier idea of mine to separate different
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| 92 |
# kinds of prediction methods - appreciated?
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| 93 |
# "use" rather than "made-of"?
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| 94 |
# -- Steffen
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| 95 |
made-of::algorithm:dynamic-programming
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| 96 |
made-of::algorithm:hashing
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| 97 |
made-of::algorithm:hidden-markov-model
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| 98 |
made-of::algorithm:neural-network
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| 99 |
made-of::algorithm:dimension-reduction # to comprise ICA and PCA, spring-embedding -- Steffen
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| 100 |
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| 101 |
# some less arguable debtags:
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| 102 |
made-of::data:R # came up in my attempt to kind of homogenize biocViews with Debtags
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| 103 |
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