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Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
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Source: http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
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Files: *
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Copyright: The Bioperl developers.
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PRIMARY AUTHORS AND MAJOR CONTRIBUTORS TO BIOPERL
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Releases co-ordinated and submitted by bioperl core devs.
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.
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.
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* Ewan Birney <birney at ebi.ac.uk>
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* Chris Dagdigian <dag at sonsorol.org>
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* Hilmar Lapp <hlapp at gmx.net>
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* Heikki Lehväslaiho <heikki at ebi.ac.uk>
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* Jason Stajich <jason at bioperl.org>
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* Lincoln Stein <lstein at cshl.org>
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.
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Previous Bioperl Coordinators:
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.
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.
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* Steven Brenner <brenner at compbio.berkely.edu>
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* Georg Fuellen <fuellen at alum.mit.edu>
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* Steve Chervitz <sac at bioperl.org>
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.
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Major Contributors
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.
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* Richard Adams <Richard.Adams at ed.ac.uk>
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* Shuly Avraham <avraham at cshl.org> - Bio::Graphics::Glyph
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* Sendu Bala <bix at sendu.me.uk>
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* Peter Blaiklock <pblaiklo at restrictionmapper.org>
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* Benjamin Berman <benb at fruitfly.berkeley.edu>
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* Matthew Betts <Matthew.Betts at ii.uib.no>
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* David Block <dblock at gnf.org>
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* Kris Boulez <kris.boulez at algonomics.com>
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* Tim Bunce <Tim.Bunce at pobox.com> - code optimizations
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* Scott Cain <cain at cshl.org> - Bio::Graphics::Glyph
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* Yee Man Chan <ymc at yahoo.com> - Bio::Tools::dpAlign
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* Brad Chapman <chapmanb at arches.uga.edu>
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* Michele Clamp <michele at sanger.ac.uk>
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* Tony Cox <avc at sanger.ac.uk>
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* James Cuff <james at sanger.ac.uk>
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* Andrew Dalke <dalke at acm.org>
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* Allen Day <allenday at ucla.edu>
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* Jared Fox <jaredfox at ucla.edu> - Bio::SeqIO::interpro
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* Brian O’Connor <boconnor at ucla.edu> - Bio::TreeIO::svggraph
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* James Diggans <JDiggans at genelogic.com>
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* Peter Dimitrov <dimitrov at gnf.org> - Bio::Ontology
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* Rich Dobson <r.j.dobson at qmul.ac.uk> - Bio::Pop‐Gen::IO::hapmap,phase
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* Paul Edlefsen <pedlefsen at systemsbiology.org>
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* Rob Edwards <redwards at utmem.edu> - Bio::Restriction
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* Arne Elofsson <arne at sbc.su.se>
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* David Evans <David.Evans at vir.gla.ac.uk>
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* Christopher Fields <cjfields at uiuc.edu>
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* Mark Fiers <M.W.E.J.Fiers at plant.wag-ur.nl>
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* The Fugu Team <fuguteam at fugu-sg.org>
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* Luc Gauthier <lgauthie at hotmail.com>
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* James Gilbert <jgrg at sanger.ac.uk>
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* Nat Goodman
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* Ed Green <ed at compbio.berkeley.edu>
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* Matthew Hahn <matthew.hahn at duke.edu>
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* Roger Hall <roger at iosea.com>
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* Todd Harris <harris at cshl.org> - SVG support in Bio::Graphics
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* Mauricio Herrera Cuadra <arareko at campus.iztacala.unam.mx>
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* Ian Holmes <ihn at fruitfly.org>
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* Shawn Hoon <shawnh at fugu-sg.org>
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* Robert Hubley <rhubley at systemsbiology.org>
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* Joseph Insana <insana at ebi.ac.uk> - Bio::LiveSeq
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* Donald Jackson <donald.jackson at bms.com> - SiRNA
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* Keith James <kdj at sanger.ac.uk> - Bio::Tools::Geneid
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* Nicolas Joly <njoly at pasteur.fr>
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* Ian Korf <ikorf at sapiens.wustl.edu>
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* Dan Kortschak <kortschak at rsbs.anu.edu.au>
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* Arek Kasprzyk <arek at ebi.ac.uk>
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* Andreas Kähäri <andreas.kahari at ebi.ac.uk>
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* Charles C. Kim <cckim at stanford.edu>
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* Stefan Kirov <skirov at utk.edu> - Bio::Matrix::PSM
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* Balamurugan Kumarasamy <savikalpa at fugu-sg.org>
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* Josh Lauricha <laurichj at cs.ucr.edu> - Bio::SeqIO::tigr
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* Eckhard Lehmann <ecky at e-lehmann.de>
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* Catherine Letondal <letondal at pasteur.fr>
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* Philip Lijnzaad <p.lijnzaad at med.uu.nl>
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* Aaron Mackey <amackey at pcbi.upenn.edu>
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* Brad Marshall <bradmars at yahoo.com>
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* Chad Matsalla <chad at dieselwurks.com>
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* Andrew Macgregor <andrew at anatomy.otago.ac.nz>
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* Sheldon McKay <mckays at cshl.edu>
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* Juha Muilu <muilu at ebi.ac.uk>
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* Chris Mungall <cjm at fruitfly.org>
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* Giri Narasimhan <giri at cs.fiu.edu>
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* Brian Osborne <bosborne at alum.mit.edu>
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* Xiaokang Pan <pan at cshl.org> - Bio::Graphics::Glyph
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* Jong Park
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* Matthew Pocock <matthew_pocock at yahoo.co.uk>
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* Lorenz Pollack <lorenz at ist.org> -- BPlite porting
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* Richard Resnick -- original Bio::Seq
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* Todd Richmond <todd at andrew2.stanford.edu>
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* Peter Schattner <schattner at alum.mit.edu>
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* Torsten Seemann <torsten.seemann at infotech.monash.edu.au> -- Bio::Tools::Run::StandaloneBlast
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* Martin Senger <senger at ebi.ac.uk> -- Bio::Biblio
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* Nigam Shah <nigam at psu.edu>
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* Shengqiang Shu <sshu at bdgp.lbl.gov> - Bio::Graphics::Glyph
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* Allen Smith <allens at cpan.org> -- Bio::Matrix and Bio::SimpleAlign fixes
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* Marc Sohrmann <ms2 at sanger.ac.uk>
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* Robson Francisco de Souza <rfsouza at citri.iq.usp.br> - Bio::Assem‐bly
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* Mark Southern <mark_southern at merck.com>
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* Will Spooner <whs at sanger.ac.uk>
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* Arne Stabenau <stabenau at ebi.ac.uk>
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* Elia Stupka <elia at fugu-sg.org>
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* Gert Thijs <gert.thijs at esat.kuleuven.ac.be>
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* James Thompson <tex at biosysadmin.com> - Bio::Matrix::PSM protein-related modules.
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* Charles Tilford <tilfordc at bms.com>
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* Anthony Underwood <aunderwood at phls.org.uk>
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* Paul-Christophe Varoutas
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* Andrew G. Walsh <paeruginosa at hotmail.com>
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* Kai Wang <tumorimmunology at yahoo.com>
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* Gary Williams <G.Williams at hgmp.mrc.ac.uk>
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* Mark Wilkinson <mwilkinson at gene.pbi.nrc.ca>
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* Helge Weissig <helgew at sdsc.edu>
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* Juguang Xiao <juguang at tll.org.sg>
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* Alex Zelensky <alex_zelensky at mac.com> - Bioperl-DB
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* Peili Zhang <peili at morgan.harvard.edu>
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* Christian M. Zmasek <czmasek at gnf.org> - Bio::Phenotype & Bio::Ontology
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License: Perl
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Comment:
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Everyone can use it! We don't care if you are academic, corporate, or
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government. BioPerl is licensed under the same terms as Perl itself, which
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means it is dually-licensed under either the Artistic or GPL licenses. The Perl
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Artistic License, or the GNU GPL covers all the legalese and what you can and
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can't do with the source code.
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.
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We do appreciate:
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.
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* You letting us know you sell or use a product that uses BioPerl. This helps
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us show people how useful our toolkit is. It also helps us if we seek funding
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from a government source, to identify the utility of the code to many different
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groups of users. Add your project and institution to our BioPerl Users page.
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.
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* If you fix bugs, please let us know about them. Because Bioperl is
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dual-licensed under the GPL or Artistic licenses, you can choose the Artistic
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license, which means that you are not required to submit the code fixes, but in
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the spirit of making a better product we hope you'll contribute back to the
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community any insight or code improvements.
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.
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* Please include the AUTHORS file and ascribe credit to the original BioPerl
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toolkit where appropriate.
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.
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* If you are an academic and you use the software, please cite the article.
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See the BioPerl publications for a list of papers which describe components in
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the toolkit.
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URL: see http://www.bioperl.org/wiki/Licensing_BioPerl
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Files: t/lib/Error.pm
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Copyright: © 1997-8 Graham Barr <gbarr@ti.com>
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License: Perl
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Files: t/lib/Test/Builder/Tester/Color.pm
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License: Perl
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Copyright: © 2002 Mark Fowler <mark@twoshortplanks.com>
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Files: Bio/SeqIO/bsml.pm
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Copyright: © 2001 Charles Tilford <tilfordc@bms.com>
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License: LGPL-2.1+
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2.1 of the License, or (at your option) any later version.
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.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
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Comment: On Debian systems, the complete text of the GNU Lesser General Public
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License version 2.1 can be found in ‘/usr/share/common-licenses/LGPL-2.1’.
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Files: Bio/SeqIO/msout.pm Bio/SeqIO/mbsout.pm
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Copyright: Public Domain work
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License: public-domain
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This software/database is ``United States Government Work'' under the
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terms of the United States Copyright Act. It was written as part of
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the authors' official duties for the United States Government and thus
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cannot be copyrighted. This software/database is freely available to
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the public for use without a copyright notice. Restrictions cannot
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be placed on its present or future use.
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.
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Although all reasonable efforts have been taken to ensure the accuracy
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and reliability of the software and data, the National Human Genome
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Research Institute (NHGRI) and the U.S. Government does not and cannot
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warrant the performance or results that may be obtained by using this
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software or data. NHGRI and the U.S. Government disclaims all
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warranties as to performance, merchantability or fitness for any
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particular purpose.
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License: Perl
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This program is free software; you can redistribute it and/or modify
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it under the terms of either:
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.
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a) the GNU General Public License as published by the Free Software
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Foundation; either version 1, or (at your option) any later
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version, or
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.
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b) the "Artistic License" which comes with Perl.
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Comment: On Debian systems, the complete text of the Artistic License can be
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found in ‘/usr/share/common-licenses/Artistic’, and the complete text of the
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GNU General Public License version 1 can be found in
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‘/usr/share/common-licenses/GPL-1’.
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Files: debian/*
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Copyright: © 1999 Stéphane Bortzmeyer <bortzmeyer@debian.org>
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© 2001 Dr. Guenter Bechly <gbechly@debian.org>
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© 2001 Adrian Bunk <bunk@fs.tum.de>
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© 2001—2004 Matt Hope <dopey@debian.org>
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© 2007—2011 Charles Plessy <charles-debian-nospam@plessy.org>
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© 2008 David Paleino <d.paleino@gmail.com>
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© 2008 Nelson A. de Oliveira <naoliv@debian.org>
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License: unclear
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The license under which is placed the work of the earlier contributors is
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unknown. The work of Charles Plessy can be treated as if it were public
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domain.
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